New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4974042 =	72 (1.370)	5 (0.100)	4/234	NT	7.1%	coding (1607/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4974073 =	63 (1.260)					coding (1576/2043 nt)	flgK	flagellar hook‑associated protein FlgK

GCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAACACCAC  >  NC_002947/4973893‑4974184                                                                                                                                                      |                                                                                                                                               gCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCGCCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCAGCTAGAATCGGGt                                                                                                                                                >  1:293188/1‑150 (MQ=255) gCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGt                                                                                                                                                >  2:215980/1‑150 (MQ=255)  cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                                               >  2:868089/1‑150 (MQ=255)  cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                                               <  2:1201081/150‑1 (MQ=255)  cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                                               <  2:113006/150‑1 (MQ=255)  cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                                               >  2:1081937/1‑150 (MQ=255)  cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                                               <  1:215980/150‑1 (MQ=255)     gTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgcc                                                                                                                                            >  2:1103369/1‑150 (MQ=255)         agcagcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggcc                                                                                                                                        <  1:868089/150‑1 (MQ=255)          gcagcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggccg                                                                                                                                       <  2:417665/150‑1 (MQ=255)                 gTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAg                                                                                                                                >  2:1155382/1‑150 (MQ=255)                     gCATTGCGGTTGTCCGCCTTGCCGTGGGTCAGGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATc                                                                                                                            >  1:37302/1‑150 (MQ=255)                        ttGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGc                                                                                                                         >  1:1030632/1‑150 (MQ=255)                        ttGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGc                                                                                                                         >  2:1321611/1‑150 (MQ=255)                           cGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACg                                                                                                                      >  2:778122/1‑150 (MQ=255)                                 aggacgttGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggc                                                                                                                                         >  2:1037159/7‑125 (MQ=255)                                 aggacgttGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggc                                                                                                                                         <  1:1037159/119‑1 (MQ=255)                                   cgcgtggtgttcgacgctgccagcggtggatcccagggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccaTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGa                                                                                                              >  2:254664‑M1/116‑150 (MQ=255)                                     ccTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATGCAGAATCGGGTCGCCGGCCGCATCCAGGATCGGCACGGCGATGGACa                                                                                                            >  1:446714/1‑150 (MQ=255)                                      cTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACaa                                                                                                           >  1:1408596/1‑150 (MQ=255)                                       ttGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAAc                                                                                                          >  2:644559/1‑150 (MQ=255)                                          ncGTCGGCATTGAACGACAGGGTAAAGCNGTCATTGGNCGCAGGGCTNCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATACAGAATCGGGTCGCCGGCCGCATCCAACATAGGCACGGGGATGGACAACtgg                                                                                                       >  1:478836/2‑148 (MQ=255)                                           cGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCa                                                                                                                                 >  1:296745/1‑123 (MQ=255)                                           cGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCa                                                                                                                                 <  2:296745/123‑1 (MQ=255)                                            gTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGAc                                                                                                             <  2:1253919/142‑1 (MQ=255)                                            gTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGAc                                                                                                             >  1:1253919/1‑142 (MQ=255)                                            gTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACttgtt                                                                                                     >  2:894802/1‑150 (MQ=255)                                               ggCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTc                                                                                                  <  1:1321611/150‑1 (MQ=255)                                               ggCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTc                                                                                                  <  1:644559/150‑1 (MQ=255)                                               ggCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTc                                                                                                  <  2:1408596/150‑1 (MQ=255)                                               ggCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACAAGTTGTc                                                                                                  <  2:1030632/150‑1 (MQ=255)                                                 cATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACAAGTTGTcca                                                                                                <  1:1353901/150‑2 (MQ=255)                                                       cagcggtggctcccagggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccaTCGCCGGCCGCATCCAGCATCGGCACGGCGAt                                                                                                                 <  1:1291429‑M1/32‑1 (MQ=255)                                                       cagcggtggctcccagggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccaTCGCCGGCCGCATCCAGCATCGGCACGGCGAt                                                                                                                 >  2:1291429‑M1/96‑127 (MQ=255)                                                       cagcggtggctcccagggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccaTCGCCGGCCGCATCCAGCATCGGCACGGCGATgg                                                                                                               >  2:1081614‑M1/96‑129 (MQ=255)                                                       cagcggtggctcccagggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccaTCGCCGGCCGCATCCAGCATCGGCACGGCGATgg                                                                                                               <  1:1081614‑M1/34‑1 (MQ=255)                                                       aCGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAg                                                                                          <  1:911777/150‑1 (MQ=255)                                                          aCAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCt                                                                                                >  2:271162/1‑141 (MQ=255)                                                          aCAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCt                                                                                                <  1:271162/141‑1 (MQ=255)                                                                tAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACttgtt                                                                                                     <  1:1032254/130‑1 (MQ=255)                                                                tAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACttgtt                                                                                                     >  2:1032254/1‑130 (MQ=255)                                                                tAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGc                                                                                 <  1:455540/150‑1 (MQ=255)                                                                tAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGc                                                                                 >  2:640397/1‑150 (MQ=255)                                                                        tCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTa                                                                         >  1:203983/1‑150 (MQ=255)                                                                        tCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTa                                                                         <  1:640397/150‑1 (MQ=255)                                                                         cATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTAc                                                                        <  1:554737/150‑1 (MQ=255)                                                                         cATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTAc                                                                        <  2:1127753/150‑1 (MQ=255)                                                                          aTTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATgc                                                                                                               <  1:1279192/110‑2 (MQ=255)                                                                          aTTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATgc                                                                                                               >  2:1279192/1‑109 (MQ=255)                                                                          aTTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCCCCACCCTGCCGGTAcc                                                                       >  2:483938/1‑150 (MQ=255)                                                                          aTTGGCCGCAGGGATGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTAcc                                                                       >  2:1059442/1‑150 (MQ=255)                                                                                 gCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTgg                                                                <  1:894802/150‑1 (MQ=255)                                                                                    gggCTGCCACCGATTCTGGTCTCGACGGCAAAGGTACGCGGCTTCCTTGTATTATCCAGTATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGCACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTa                                                             <  2:37302/150‑1 (MQ=255)                                                                                         gCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCtt                                                        <  2:203983/150‑1 (MQ=255)                                                                                          ccACCGATTGTGGTCTCGGCGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTg                                                       >  1:321118/1‑150 (MQ=255)                                                                                          ccACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACgg                                                                                                                     <  1:642030/88‑1 (MQ=255)                                                                                          ccACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACgg                                                                                                                     >  2:642030/1‑88 (MQ=255)                                                                                          ccACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTg                                                       <  2:1104610/150‑1 (MQ=255)                                                                                            aCCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggcc                                                                                                                                        <  1:5165/67‑1 (MQ=255)                                                                                            aCCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggcc                                                                                                                                        >  2:5165/1‑67 (MQ=255)                                                                                                   gtgGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAAc                                              <  1:778122/150‑1 (MQ=255)                                                                                                       tctcGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGTCAc                                                                                                                       >  1:1391317/1‑73 (MQ=255)                                                                                                       tctcGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCAc                                                                                                                       <  2:1391317/73‑1 (MQ=255)                                                                                                       tctcGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCt                                                                  >  1:1412235/1‑126 (MQ=255)                                                                                                       tctcGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCt                                                                  <  2:1412235/126‑1 (MQ=255)                                                                                                        ctcGACGGAAAAGGTTGGTGTTTTTCCTCTACCATCCAGAAGCGGGTCGCCGTCCGCATCTAGCATCGGCACTTCGATGGACAACTTGCTTTCCTTCTCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCtt                                         <  2:275961/150‑1 (MQ=255)                                                                                                         tcGACGTCAAAGGGACGCGGGTTACGGCTTGCATCCAGAGTCGGGTCTCCGGCCGCCTCCAGGACCGGCACGACTCTGGACAACTAGTTGTCCTGCCCAGGGACAACGCTGACGGTACCAACCTGGGTACCCTTGGCGTCGAACAGCttt                                        >  2:239994/1‑149 (MQ=255)                                                                                                         tcGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTg                                        >  2:985372/1‑150 (MQ=255)                                                                                                           gACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTa                                      >  1:1008149/1‑150 (MQ=255)                                                                                                            aCGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAg                                     <  2:1202639/150‑1 (MQ=255)                                                                                                               gCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCCACCAGCATGGGCACGGCCATGGGCAACATGTTGTCCTGCCAAGGGACCGCGCTGCCAGGACCAATCTGTGTCCCCTTGACGTCGATCAGCTTGTAGccc                                  >  2:499618/1‑150 (MQ=255)                                                                                                                 aaaGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTg                                >  1:948519/1‑150 (MQ=255)                                                                                                                    ggTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGa                             >  2:1360130/1‑150 (MQ=255)                                                                                                                     gTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTa                                      >  2:1321902/1‑140 (MQ=255)                                                                                                                     gTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTa                                      <  1:1321902/140‑1 (MQ=255)                                                                                                                           gggTTACCGCTACCATCCAGAATCTGGTCGCCGGCAGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGGCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGGGCCACCg                      >  1:472869/1‑150 (MQ=255)                                                                                                                              ttACCGCTACCATCCAGCATCGGGCCGCCGGCAGCAACCCGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTg                   <  2:1008149/150‑1 (MQ=255)                                                                                                                                     tACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGt            >  2:1360335/1‑150 (MQ=255)                                                                                                                                         aTCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTa                                                                         <  2:578877/85‑1 (MQ=255)                                                                                                                                         aTCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTa                                                                         >  1:578877/1‑85 (MQ=255)                                                                                                                                          tCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGaa                                               <  2:408197/110‑1 (MQ=255)                                                                                                                                          tCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGaa                                               >  1:408197/1‑110 (MQ=255)                                                                                                                                          tCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTCTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAac       <  1:1360130/150‑1 (MQ=255)                                                                                                                                             aGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATATGGGTCCCCGTGTCGTGGAACAGCTTGTAGCTCTGGGAGCCACCGCTGGCCGCGTCGAAcacc    >  2:336992/1‑150 (MQ=255)                                                                                                                                               aaTCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAAcaccac  <  1:1059442/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                               GCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCTGGGAGCCACCGCTGGCAGCGTCGAACACCAC  >  NC_002947/4973893‑4974184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.