| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5129071 = | 70 (1.330) | 3 (0.060) | 3/238 | NT | 4.2% | coding (82/438 nt) | PP_4515 | MarR family transcriptional regulator |
| ? | NC_002947 | 5129092 = | 68 (1.340) | coding (61/438 nt) | PP_4515 | MarR family transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTAGCTGCCTAATAATTAGATCTACTCCAATGAGTTCCTTATGCCCCTGAACGACAACCAACACCGCTTTGGCATGCAACTGGCCCAGATGTCCCGAGGTTGGCGTGCCGAGCT‑GGACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5129223‑5129071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTT > NC_002947/5129092‑5129237 GCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTAGCTGCCTAATAATTAGATCTACTCCAATGAGTTCCTTATGCCCCTGAACGACAACCAACACCGCTTTGGCATGCAACTGGCCCAGATGTCCCGAGGTTGGCGTGCCGAGCT‑GGACC > 1:196626/1‑150GCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTAGCTGCCTAATAATTAGATCTACTCCAATGAGTTCCTTATGCCCCTGAACGACAACCAACACCGCTTTGGCATGCAACTGGCCCAGATGTCCCGAGGTTGGCGTGCCGAGCT‑GGACC < 2:546782/150‑1 GGCAGGGCATGGTTAGCTGCCTAATAATTAGATCTACTCCAATGAGTTCCTTATGCCCCTGAACGACAACCAACACCGCTTTGGCATGCAACTGGCCCAGATGTCCCGAGGTTGGCG‑GTCCAGCTCGGCACGCCAACCTCGGGACATCTG < 1:993807/150‑1 CGAGGTTGGCGTGCCGAGCT‑GGACCGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTT > 1:144122/1‑80 CGAGGTTGGCGTGCCGAGCT‑GGACCGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTT < 2:144122/80‑1 CGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTT > 2:311416/1‑150 GCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTA < 1:964595/119‑1 GCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTA > 2:964595/1‑119 GCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTAGCTGCCTAATAATTAGATCTACTCCAATGAGTTCCTTATGCCCCTGAACGACAACCAACACCGCTTTGGCATGCAACTGGCCCAGATGTCCCGAGGTTGGCGTGCCGAGCT‑GGACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5129223‑5129071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTT > NC_002947/5129092‑5129237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |