New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5129071 =	70 (1.330)	3 (0.060)	3/238	NT	4.2%	coding (82/438 nt)	PP_4515	MarR family transcriptional regulator
	?	NC_002947	5129092 =	68 (1.340)					coding (61/438 nt)	PP_4515	MarR family transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

GCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAA  >  NC_002947/5128923‑5129215                                                                                                                                                     |                                                                                                                                                  gcTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAggcgg                                                                                                                                                  >  1:17710/1‑150 (MQ=255)  cTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAggcggc                                                                                                                                                 <  2:1325378/150‑1 (MQ=255)   ttCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGgcggcg                                                                                                                                                >  1:305474/1‑150 (MQ=255)   aacgcgtaaccatggccgagccttgcctcgtagggcagggcatggttagctgcctaataattagatctactccaatgagttccttatgcccctgaacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGCg                                                                                                                                                >  2:311416‑M1/147‑150 (MQ=255)     ccAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGt                                                                                                                                              >  1:729531/1‑150 (MQ=255)        ggCTGTCGAGCAGACCCGCCGGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCGCACCCTGTGTCGTGGCTTCTCCGAAGCGGGACAGGTGAAGTATCGCCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑a                                                                                                                                          <  2:182828/150‑1 (MQ=255)                aGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑a                                                                                                                                          <  1:1235050/142‑1 (MQ=255)                aGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑a                                                                                                                                          >  2:1235050/1‑142 (MQ=255)                 gCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCAc                                                                                                                                 >  1:156294/1‑150 (MQ=255)                   aGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGCGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGc                                                                                                                               <  2:164674/150‑1 (MQ=255)                          ccAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCCGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                        >  1:988447/1‑150 (MQ=255)                           cAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                       >  1:1382835/1‑150 (MQ=255)                            aGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCgg                                                                                                                      <  2:1347717/150‑1 (MQ=255)                              ggTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGa                                                                                                                    <  1:852148/150‑1 (MQ=255)                                 tagggcagggcatggttagctgcctaataattagatctactccaatgagttccttatgcccctgaacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGc                                                                                                                                                 <  1:964595‑M1/3‑1 (MQ=255)                                 tagggcagggcatggttagctgcctaataattagatctactccaatgagttccttatgcccctgaacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGc                                                                                                                                                 >  2:964595‑M1/117‑119 (MQ=255)                                 cGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACAt                                                                                                                 >  1:1049293/1‑150 (MQ=255)                                   ggCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCt                                                                                                               >  2:462659/1‑150 (MQ=255)                                    gCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCACGGGACATCTg                                                                                                              >  1:1130954/1‑150 (MQ=255)                                     ccTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCATCACCAGCCAGCGCGCCTGGGACAGGTTGAGTACGGCCAGGCGGCGGTAC‑AGCTCGGCACGCCAATCTCGTGACATCTgg                                                                                                             <  2:566241/150‑1 (MQ=255)                                       ttCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCg                                                                                                                                     >  1:908232/1‑124 (MQ=255)                                       ttCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCg                                                                                                                                     <  2:908232/124‑1 (MQ=255)                                                tACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAt                                                                                                  >  1:809745/1‑150 (MQ=255)                                                tACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAt                                                                                                  >  2:977706/1‑150 (MQ=255)                                                      ctGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                            <  1:312051/150‑1 (MQ=255)                                                        gggCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTCGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGc                                                                                          <  2:113089/150‑1 (MQ=255)                                                         ggCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCg                                                                                         <  2:1049293/150‑1 (MQ=255)                                                              gCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTc                                                                                                                                             <  1:477253/94‑1 (MQ=255)                                                              gCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTc                                                                                                                                             >  2:477253/1‑94 (MQ=255)                                                                tCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttgg                                                                                  <  1:1294429/150‑1 (MQ=255)                                                                tCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttgg                                                                                  >  2:509990/1‑150 (MQ=255)                                                                  aCGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAGAGCGGTgttggtt                                                                                <  2:928162/150‑1 (MQ=255)                                                                  aCGCTGTGTCGGGGCATCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCCGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttggtt                                                                                <  2:988447/150‑1 (MQ=255)                                                                     cTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTc                                                                             <  2:535636/150‑1 (MQ=255)                                                                           cGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg                                                                       <  2:455393/150‑1 (MQ=255)                                                                            ggggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAgg                                                                      <  1:977706/150‑1 (MQ=255)                                                                            ggggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAgg                                                                      <  1:462659/150‑1 (MQ=255)                                                                             gggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAgg                                                                      <  1:410524/149‑1 (MQ=255)                                                                             gggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAgg                                                                      >  2:410524/1‑149 (MQ=255)                                                                             gggCTTCTTCGAAGCGGGCCAGGGGCAGCAACACCAGCGAGCGCCCCTGGGAGTGGTTGAGCCCGGACAGGAGGCGGGCC‑AGCTCGGGACGCCAACCTCGGGACATGTGGACCAGTTGCATAACAAAGCCGTTTTCGCTGTCATTCAcgg                                                                     >  2:284648/1‑150 (MQ=255)                                                                                    ttcGAAGCGGGACAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAg                                                              >  2:235136/1‑150 (MQ=255)                                                                                       gAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGaa                                                           <  2:809745/150‑1 (MQ=255)                                                                                       gAAGAGGGCCAGGTGCCGCAACACGCGCCAGCGCGCCTCAGACAGGTTCAGCCCTGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGaa                                                           <  2:156294/150‑1 (MQ=255)                                                                                          gCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                        >  2:813207/1‑86 (MQ=255)                                                                                          gCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                        <  1:813207/86‑1 (MQ=255)                                                                                              gCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    <  1:340697/150‑1 (MQ=255)                                                                                              acctgttGCATCAACATCAGCCAGCGCGCCTGAGACAGGTTGAGAACGGCCAGGCGGCCGTCC‑ATCTCTTCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTCTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    <  2:305474/144‑1 (MQ=255)                                                                                               ccAGGTGCAGCAACACGAGCCAGCCCGCCTGGGACAGGTTGAGCCCGGCCAGGAGGCGGACC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAACGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTgg                                                   >  2:1324893/1‑150 (MQ=255)                                                                                               ccAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTgg                                                   >  2:1061097/1‑150 (MQ=255)                                                                                                 aacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                       >  1:144122‑M1/53‑80 (MQ=255)                                                                                                 aacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                       <  2:144122‑M1/28‑1 (MQ=255)                                                                                                   gTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTa                                               >  2:379011/1‑150 (MQ=255)                                                                                                      cagcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAGGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGAt                                            <  1:1123468/150‑1 (MQ=255)                                                                                                       agcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGgt                                                                                       >  2:420781/1‑106 (MQ=255)                                                                                                       agcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGgt                                                                                       <  1:420781/106‑1 (MQ=255)                                                                                                        gcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCt                                          >  2:454353/1‑150 (MQ=255)                                                                                                        gcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCt                                          >  1:1416597/1‑150 (MQ=255)                                                                                                         caACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTa                                         >  2:1406227/1‑150 (MQ=255)                                                                                                           acacCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAat                                       >  2:196626/1‑150 (MQ=255)                                                                                                             acCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAAcc                                                                                                                          >  1:1102290/1‑65 (MQ=255)                                                                                                             acCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAAcc                                                                                                                          <  2:1102290/65‑1 (MQ=255)                                                                                                               cagccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGtt                                                                                                      >  2:1278801/1‑83 (MQ=255)                                                                                                               cagccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGtt                                                                                                      <  1:1278801/83‑1 (MQ=255)                                                                                                                 gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                 <  2:1382835/150‑1 (MQ=255)                                                                                                                 gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                 <  2:1130954/150‑1 (MQ=255)                                                                                                                 gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                 <  1:235136/150‑1 (MQ=255)                                                                                                                  ccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAgg                                <  2:601580/150‑1 (MQ=255)                                                                                                                   ccgcgcgaCTGGGACAGGCTGCGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAACGCGGTGTTGGTTGTCGTTCAAGGGCATAAGCACCTCATTGGAGTACATCTAATTCTTAggt                               <  2:287854/148‑2 (MQ=255)                                                                                                                            tGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    >  1:100088/1‑120 (MQ=255)                                                                                                                            tGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    <  2:100088/120‑1 (MQ=255)                                                                                                                               gACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    >  2:790339/1‑117 (MQ=255)                                                                                                                               gACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTg                                                    <  1:790339/117‑1 (MQ=255)                                                                                                                                     ttGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATc                                           <  2:92769/120‑1 (MQ=255)                                                                                                                                     ttGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATc                                           >  1:92769/1‑120 (MQ=255)                                                                                                                                     cagatgtcccgaggttGGCGTGCCGAGCTGGAC‑CGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtgccctgcc             <  1:993807‑M1/134‑1 (MQ=255)                                                                                                                                         gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                            >  1:938408/1‑67 (MQ=255)                                                                                                                                         gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                            <  2:938408/67‑1 (MQ=255)                                                                                                                                         gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTAc         >  2:40189/1‑150 (MQ=255)                                                                                                                                            cGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAg      <  2:729531/150‑1 (MQ=255)                                                                                                                                                cAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTACATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCaa  <  2:555304/150‑1 (MQ=255)                                                                                                                                                cAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCAGTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCaa  <  2:1416597/150‑1 (MQ=255)                                                                                                                                                   gcggcgGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtg                    >  1:996401/1‑129 (MQ=255)                                                                                                                                                   gcggcgGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtg                    <  2:996401/129‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAA  >  NC_002947/5128923‑5129215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.