New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5129071 =	70 (1.330)	3 (0.060)	3/238	NT	4.2%	coding (82/438 nt)	PP_4515	MarR family transcriptional regulator
	?	NC_002947	5129092 =	68 (1.340)					coding (61/438 nt)	PP_4515	MarR family transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

CCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGAT  >  NC_002947/5128948‑5129241                                                                                                                                                  |                                                                                                                                                        ccAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCCGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                                                    >  1:988447/1‑150 (MQ=255)  cAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                                                   >  1:1382835/1‑150 (MQ=255)   aGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCgg                                                                                                                                                  <  2:1347717/150‑1 (MQ=255)     ggTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGa                                                                                                                                                <  1:852148/150‑1 (MQ=255)        cGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACAt                                                                                                                                             >  1:1049293/1‑150 (MQ=255)          ggCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCt                                                                                                                                           >  2:462659/1‑150 (MQ=255)           gCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCACGGGACATCTg                                                                                                                                          >  1:1130954/1‑150 (MQ=255)            ggcagggcatggttagctgcctaataattagatctactccaatgagttccttatgcccctgaacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttggcggtccagctcggcacgccAACCTCGGGACATCTg                                                                                                                                          <  1:993807‑M2/16‑1 (MQ=255)            ccTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCATCACCAGCCAGCGCGCCTGGGACAGGTTGAGTACGGCCAGGCGGCGGTAC‑AGCTCGGCACGCCAATCTCGTGACATCTgg                                                                                                                                         <  2:566241/150‑1 (MQ=255)                       tACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAt                                                                                                                              >  1:809745/1‑150 (MQ=255)                       tACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAt                                                                                                                              >  2:977706/1‑150 (MQ=255)                             ctGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                                                        <  1:312051/150‑1 (MQ=255)                               gggCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTCGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGc                                                                                                                      <  2:113089/150‑1 (MQ=255)                                ggCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCg                                                                                                                     <  2:1049293/150‑1 (MQ=255)                                       tCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttgg                                                                                                              <  1:1294429/150‑1 (MQ=255)                                       tCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttgg                                                                                                              >  2:509990/1‑150 (MQ=255)                                         aCGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAGAGCGGTgttggtt                                                                                                            <  2:928162/150‑1 (MQ=255)                                         aCGCTGTGTCGGGGCATCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCCGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTgttggtt                                                                                                            <  2:988447/150‑1 (MQ=255)                                            cTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTc                                                                                                         <  2:535636/150‑1 (MQ=255)                                                  cGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg                                                                                                   <  2:455393/150‑1 (MQ=255)                                                   ggggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg‑‑g                                                                                                <  1:462659/150‑1 (MQ=255)                                                   ggggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg‑‑g                                                                                                <  1:977706/150‑1 (MQ=255)                                                    gggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg‑‑g                                                                                                >  2:410524/1‑149 (MQ=255)                                                    gggCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAg‑‑g                                                                                                <  1:410524/149‑1 (MQ=255)                                                    gggCTTCTTCGAAGCGGGCCAGGGGCAGCAACACCAGCGAGCGCCCCTGGGAGTGGTTGAGCCCGGACAGGAGGCGGGCC‑AGCTCGGGACGCCAACCTCGGGACATGTGGACCAGTTGCATAACAAAGCCGTTTTCGCTGTCATTCAc‑‑gg                                                                                               >  2:284648/1‑150 (MQ=255)                                                           ttcGAAGCGGGACAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAg                                                                                        >  2:235136/1‑150 (MQ=255)                                                              gAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGaa                                                                                     <  2:809745/150‑1 (MQ=255)                                                              gAAGAGGGCCAGGTGCCGCAACACGCGCCAGCGCGCCTCAGACAGGTTCAGCCCTGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGaa                                                                                     <  2:156294/150‑1 (MQ=255)                                                                 gCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                                                    >  2:813207/1‑86 (MQ=255)                                                                 gCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTc                                                                                                                                                    <  1:813207/86‑1 (MQ=255)                                                                     gCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              <  1:340697/150‑1 (MQ=255)                                                                     acctgttGCATCAACATCAGCCAGCGCGCCTGAGACAGGTTGAGAACGGCCAGGCGGCCGTCC‑ATCTCTTCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTCTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              <  2:305474/144‑1 (MQ=255)                                                                      ccAGGTGCAGCAACACGAGCCAGCCCGCCTGGGACAGGTTGAGCCCGGCCAGGAGGCGGACC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAACGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTgg                                                                             >  2:1324893/1‑150 (MQ=255)                                                                      ccAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTgg                                                                             >  2:1061097/1‑150 (MQ=255)                                                                        aacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                                                   <  2:144122‑M1/28‑1 (MQ=255)                                                                        aacgacaaccaacaccgctttggcatgcaactggcccagatgtcccgaggttGGCGGTCC‑AGCTCGGCACGCCAACCTCg                                                                                                                                                   >  1:144122‑M1/53‑80 (MQ=255)                                                                          gTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTa                                                                         >  2:379011/1‑150 (MQ=255)                                                                             cagcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCAGGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGAt                                                                      <  1:1123468/150‑1 (MQ=255)                                                                              agcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGgt                                                                                                                   >  2:420781/1‑106 (MQ=255)                                                                              agcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGgt                                                                                                                   <  1:420781/106‑1 (MQ=255)                                                                               gcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCt                                                                    >  2:454353/1‑150 (MQ=255)                                                                               gcaACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCt                                                                    >  1:1416597/1‑150 (MQ=255)                                                                                caACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTa                                                                   >  2:1406227/1‑150 (MQ=255)                                                                                  acacCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAat                                                                 >  2:196626/1‑150 (MQ=255)                                                                                    acCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAAcc                                                                                                                                                      >  1:1102290/1‑65 (MQ=255)                                                                                    acCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAAcc                                                                                                                                                      <  2:1102290/65‑1 (MQ=255)                                                                                      cagccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGtt                                                                                                                                  >  2:1278801/1‑83 (MQ=255)                                                                                      cagccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGtt                                                                                                                                  <  1:1278801/83‑1 (MQ=255)                                                                                        gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                                           <  2:1130954/150‑1 (MQ=255)                                                                                        gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                                           <  1:235136/150‑1 (MQ=255)                                                                                        gccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAg                                                           <  2:1382835/150‑1 (MQ=255)                                                                                         ccagcGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAgg                                                          <  2:601580/150‑1 (MQ=255)                                                                                          ccgcgcgaCTGGGACAGGCTGCGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAACGCGGTGTTGGTTGTCGTTCAA‑‑GGGCATAAGCACCTCATTGGAGTACATCTAATTCTTAggt                                                         <  2:287854/148‑2 (MQ=255)                                                                                                   tGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              >  1:100088/1‑120 (MQ=255)                                                                                                   tGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              <  2:100088/120‑1 (MQ=255)                                                                                                      gACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              >  2:790339/1‑117 (MQ=255)                                                                                                      gACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTg                                                                              <  1:790339/117‑1 (MQ=255)                                                                                                            ttGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATc                                                                     <  2:92769/120‑1 (MQ=255)                                                                                                            ttGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATc                                                                     >  1:92769/1‑120 (MQ=255)                                                                                                            cagatgtcccgaggttGGCGTGCCGAGCTGGAC‑CGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtgccctgcc                                       <  1:993807‑M1/134‑1 (MQ=255)                                                                                                                gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                                                        >  1:938408/1‑67 (MQ=255)                                                                                                                gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCaaa                                                                                                                        <  2:938408/67‑1 (MQ=255)                                                                                                                gCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTAc                                   >  2:40189/1‑150 (MQ=255)                                                                                                                   cGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAg                                <  2:729531/150‑1 (MQ=255)                                                                                                                      cgaggttggcgtgccgagctggaccgccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGtt                                                                                                      <  2:144122‑M2/52‑1 (MQ=255)                                                                                                                      cgaggttggcgtgccgagctggaccgccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGtt                                                                                                      >  1:144122‑M2/29‑80 (MQ=255)                                                                                                                       cAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTACATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCaa                            <  2:555304/150‑1 (MQ=255)                                                                                                                       cAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCAGTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCaa                            <  2:1416597/150‑1 (MQ=255)                                                                                                                          gcggcgGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtg                                              >  1:996401/1‑129 (MQ=255)                                                                                                                          gcggcgGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCAtg                                              <  2:996401/129‑1 (MQ=255)                                                                                                                               GGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGc                    <  2:546782‑M1/150‑1 (MQ=255)                                                                                                                               GGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGc                    >  1:196626‑M1/1‑150 (MQ=255)                                                                                                                                  cc‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCTGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCAt                 <  1:1324893/150‑1 (MQ=255)                                                                                                                                  cc‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCAt                 <  1:1061097/150‑1 (MQ=255)                                                                                                                                  cc‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGCG‑AAGATG‑CGTGCCGCCTGGAATAATTCACTCATGGTAGTAAATATCATTCTTCGAAAGATAACCATGCCCTTCCCTACGAGGCAAGGCTCGGCCAt                 <  1:1391654/150‑1 (MQ=255)                                                                                                                                   c‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCCACGAGGCAAGGCTCGGCCATg                <  2:17710/150‑1 (MQ=255)                                                                                                                                       cTCGGCGCGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTc                       <  2:1129671/140‑1 (MQ=255)                                                                                                                                       cTCGGCGCGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTc                       >  1:1129671/1‑140 (MQ=255)                                                                                                                                              cgccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGtt      >  2:311416‑M2/5‑150 (MQ=255)                                                                                                                                               gccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTa                                    <  1:964595‑M2/116‑1 (MQ=255)                                                                                                                                               gccAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTa                                    >  2:964595‑M2/4‑119 (MQ=255)                                                                                                                                                  aaCCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGAt  <  1:1406227/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                        CCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCC‑AGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAG‑‑GGGCATAAGGAACTCATTGGAGTAGATCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGAT  >  NC_002947/5128948‑5129241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.