| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5295536 = | 67 (1.270) | 5 (0.100) | 5/232 | NT | 8.4% | intergenic (+19/+107) | PP_4668/PP_4669 | LysR family transcriptional regulator/OmpA family protein |
| ? | NC_002947 | 5295619 = | 46 (0.930) | intergenic (+102/+24) | PP_4668/PP_4669 | LysR family transcriptional regulator/OmpA family protein | |||||
GGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5295690‑5295536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggctATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGCCAA > NC_002947/5295619‑5295767 GGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGG < 2:899527/150‑1 TCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGG < 1:752373/133‑1 TCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGG > 2:752373/1‑133 TCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGG > 1:828134/1‑125 TCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGG < 2:828134/125‑1 TGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGG < 1:649868/122‑1 TGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGG > 2:649868/1‑122 GCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGG < 1:495987/93‑1 GCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGG > 2:495987/1‑93 GTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGG < 1:1334751/86‑1 GTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGG > 2:1334751/1‑86 GCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACA‑GGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTA > 1:32943/1‑111 GCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACA‑GGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTA < 2:32943/111‑1 CCCTGTAGGCGCGGGCAACGCGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCC > 1:1328498/1‑150 TAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGA > 1:1137140/1‑122 TAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGA < 2:1137140/122‑1 GGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGC < 1:899527/150‑1 TATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGCCAA > 1:132784/1‑150 TATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGC < 2:1326004/84‑1 TATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGC > 1:1326004/1‑84 GGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5295690‑5295536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggctATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGCCAA > NC_002947/5295619‑5295767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |