New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5356179 = | 44 (0.840) | 5 (0.100) | 4/244 | NT | 10.2% | intergenic (‑28/+89) | rbfA/infB | ribosome‑binding factor A/translation initiation factor IF‑2 |
? | NC_002947 | 5356213 = | 44 (0.840) | intergenic (‑62/+55) | rbfA/infB | ribosome‑binding factor A/translation initiation factor IF‑2 |
TCTTCAGGTAGCGCCCGGTCAGGCATTCGTCTGTCCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5356221‑5356179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTT > NC_002947/5356213‑5356333 TCTTCAGGTAGCGCCCGGTCAGGCATTCGTCTGTCCGGGCGTTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCC > 1:282238/1‑149 TCTTCAGGTAGCGCCCGGTCAGGCATTCGTCTGTCCGGGCGTTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCC < 2:282238/149‑1 CCGGTCAGGCATTCGTCTGTCCGGGCGTTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCC > 1:694202/1‑83 CCGGTCAGGCATTCGTCTGTCCGGGCGTTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCC < 2:694202/83‑1 CCGGTCAGGCATTCGTCTGTCCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTT > 1:65590/1‑150 TACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATC < 1:528234/99‑1 TACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATC > 2:528234/1‑99 TCTTCAGGTAGCGCCCGGTCAGGCATTCGTCTGTCCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5356221‑5356179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTT > NC_002947/5356213‑5356333 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |