| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5356179 = | 44 (0.840) | 5 (0.100) | 4/244 | NT | 10.2% | intergenic (‑28/+89) | rbfA/infB | ribosome‑binding factor A/translation initiation factor IF‑2 |
| ? | NC_002947 | 5356213 = | 44 (0.840) | intergenic (‑62/+55) | rbfA/infB | ribosome‑binding factor A/translation initiation factor IF‑2 | |||||
TTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCTTGACGCCAATA > NC_002947/5356069‑5356352 | ttGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGa > 2:1186653/1‑150 (MQ=255) aCTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga > 1:794926/1‑150 (MQ=255) ggcgacaagatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga < 2:282238‑M1/43‑1 (MQ=255) ggcgacaagatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga > 1:282238‑M1/107‑149 (MQ=255) tCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAg > 2:1277100/1‑148 (MQ=255) tCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAg < 1:1277100/148‑1 (MQ=255) gCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAgccgcc > 2:1200153/1‑150 (MQ=255) cTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGccc > 1:1293231/1‑150 (MQ=255) gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGCCAGACAAATGCTTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg < 2:1058881/150‑1 (MQ=255) gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg < 1:1014312/150‑1 (MQ=255) gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg > 1:1218112/1‑150 (MQ=255) cTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAgg < 1:1333574/150‑1 (MQ=255) tCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGAGGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGgc > 1:320667/1‑150 (MQ=255) cATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg > 1:1026646/1‑140 (MQ=255) cATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg < 2:1026646/140‑1 (MQ=255) cTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGgctc < 2:1161277/150‑1 (MQ=255) tCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGgctcgctc > 2:1031169/1‑150 (MQ=255) tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAgg < 1:493287/86‑1 (MQ=255) tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAgg > 2:493287/1‑86 (MQ=255) tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCt < 1:1200153/150‑1 (MQ=255) gCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtct < 1:291040/150‑1 (MQ=255) gCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCACTGTAGCAGGCACTTTCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtct > 1:1029153/1‑150 (MQ=255) ccATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtctc > 1:753426/1‑150 (MQ=255) aTTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGAATTTCTCGa > 2:1256310/1‑150 (MQ=255) ttCTTGCTACCTGTAACTTAAAGCCGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGaa < 1:278049/150‑1 (MQ=255) cTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCaa > 1:810858/1‑71 (MQ=255) cTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCaa < 2:810858/71‑1 (MQ=255) aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTc < 2:1218112/150‑1 (MQ=255) aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTc < 2:1293231/150‑1 (MQ=255) aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGAATTTCTCGAAGACTTCGATCTTGTc < 1:1256310/150‑1 (MQ=255) ttAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGc > 1:842370/1‑150 (MQ=255) ttAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGc > 2:593204/1‑150 (MQ=255) tcttcaggtagcgcccggtcaggcattcgtctgtccgggcgttACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGcc < 2:282238‑M2/106‑1 (MQ=255) tcttcaggtagcgcccggtcaggcattcgtctgtccgggcgttACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGcc > 1:282238‑M2/44‑149 (MQ=255) cAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGa < 2:753426/150‑1 (MQ=255) ccggtcaggcattcgtctgtccgggcgttACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGcc > 1:694202‑M2/30‑83 (MQ=255) ccggtcaggcattcgtctgtccgggcgttACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGcc < 2:694202‑M2/54‑1 (MQ=255) ccggtcaggcattcgtctgtccgggcgctACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGtt > 1:65590‑M2/30‑150 (MQ=255) gACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTa < 1:593204/150‑1 (MQ=255) tcAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAg < 1:299068/149‑1 (MQ=255) aGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTTTACTTTCTCGAATACTTCGATCTTGTCTCCGACCTTGACGTCGTTGTAGcc > 2:299068/1‑149 (MQ=255) aCGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGt > 2:334593/1‑123 (MQ=255) aCGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGt < 1:334593/123‑1 (MQ=255) cGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCtt < 2:794926/150‑1 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCAc > 2:1350291/1‑92 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCAc < 1:1350291/92‑1 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACt > 1:928525/1‑99 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACt < 2:928525/99‑1 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCTTg > 1:1113339/1‑150 (MQ=255) gAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCTTg > 1:213571/1‑150 (MQ=255) aCCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCTTGACGCCAATa < 1:309078/150‑1 (MQ=255) tACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATc > 2:528234‑M2/2‑99 (MQ=255) tACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATc < 1:528234‑M2/98‑1 (MQ=255) | TTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGACGTCGTTGTAGCTCTTGACGCCAATA > NC_002947/5356069‑5356352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |