New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5356179 =	44 (0.840)	5 (0.100)	4/244	NT	10.2%	intergenic (‑28/+89)	rbfA/infB	ribosome‑binding factor A/translation initiation factor IF‑2
	?	NC_002947	5356213 =	44 (0.840)					intergenic (‑62/+55)	rbfA/infB	ribosome‑binding factor A/translation initiation factor IF‑2

ACGGCGGTGATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGA  >  NC_002947/5356033‑5356326                                                                                                                                                   |                                                                                                                                                    aCGGCGGTGATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACg                                                                                                                                                  >  1:1161277/1‑150 (MQ=255)        tGATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCg                                                                                                                                              <  1:737019/147‑1 (MQ=255)        tGATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCg                                                                                                                                              >  2:737019/1‑147 (MQ=255)         gATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGCCGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACa                                                                                                                                          <  1:943854/150‑1 (MQ=255)         gATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACa                                                                                                                                          <  1:1336463/150‑1 (MQ=255)                    gACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCt                                                                                                                               >  2:309078/1‑150 (MQ=255)                      ccGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGa                                                                                                                             <  1:45213/150‑1 (MQ=255)                        gACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATTTGATCGCCAATACGATGGGTACGGCTATATTCTATGGCTATTGTTCCTACCTATAACTTAAAGCGGCAAATGCCTGAAAAGAAGAAAGCATGata                                                                                                                           >  2:278049/1‑148 (MQ=255)                        gACACGCGGAACCTTAACTTCGTGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGAcc                                                                                                                           >  2:1417649/1‑150 (MQ=255)                          ccgatctaTCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCgg                                                                                                                         <  2:388167/143‑1 (MQ=255)                          aacgacgtcaaggtcggcgacaagatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAGCGCCCGGACAGACGAATGCCTGACCgg                                                                                                                         >  1:65590‑M1/122‑150 (MQ=255)                             gcgGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGgc                                                                                                                       >  2:111828/1‑149 (MQ=255)                             gcgGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGgc                                                                                                                       <  1:111828/149‑1 (MQ=255)                              cgGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGCCGAATGCCTGACCTGgcgc                                                                                                                     <  2:770485/150‑1 (MQ=255)                               ggATCCTTGACTTCGCGACGGATCAGCTCGGACACACCGGCCCCCATGCGCTCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGACCGGACAGACGAATGCCTGACCGGGCGCt                                                                                                                    >  1:958275/1‑150 (MQ=255)                                  tCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGAATCGCATCTGATCGCCAATACGGTGGGTACGGCTATAGTCTTTGGCCATTCTTGCTAGCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCgggagatcgg                                                                                                                 >  1:388167/1‑143 (MQ=255)                                     ttGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGa                                                                                                              >  2:1186653/1‑150 (MQ=255)                                        aCTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga                                                                                                           >  1:794926/1‑150 (MQ=255)                                         ggcgacaagatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga                                                                                                           <  2:282238‑M1/43‑1 (MQ=255)                                         ggcgacaagatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAaga                                                                                                           >  1:282238‑M1/107‑149 (MQ=255)                                                 gatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggta                                                                                                                                                     <  1:528234‑M1/1‑1 (MQ=255)                                                 gatcgaagtcttcgagaaagtccaggtggctcgtaccctttaagggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggta                                                                                                                                                     >  2:528234‑M1/99‑99 (MQ=255)                                                     tCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAg                                                                                                >  2:1277100/1‑148 (MQ=255)                                                     tCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAg                                                                                                <  1:1277100/148‑1 (MQ=255)                                                        gCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAgccgcc                                                                                           >  2:1200153/1‑150 (MQ=255)                                                         cTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGccc                                                                                          >  1:1293231/1‑150 (MQ=255)                                                                 gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGCCAGACAAATGCTTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg                                                                                  <  2:1058881/150‑1 (MQ=255)                                                                 gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg                                                                                  <  1:1014312/150‑1 (MQ=255)                                                                 gCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg                                                                                  >  1:1218112/1‑150 (MQ=255)                                                                  cTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAgg                                                                                 <  1:1333574/150‑1 (MQ=255)                                                                   tCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGAGGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGgc                                                                                >  1:320667/1‑150 (MQ=255)                                                                           cATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg                                                                                  <  2:1026646/140‑1 (MQ=255)                                                                           cATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAg                                                                                  >  1:1026646/1‑140 (MQ=255)                                                                              cTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGgctc                                                                     <  2:1161277/150‑1 (MQ=255)                                                                                  tCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGgctcgctc                                                                 >  2:1031169/1‑150 (MQ=255)                                                                                             ggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCgg                                                                                                                         >  1:694202‑M1/55‑83 (MQ=255)                                                                                             ggcgagcgagccgcaagcgcctgctacagggcggcttgcggtacctcttcaggtAACGCCCGGACAGACGAATGCCTGACCgg                                                                                                                         <  2:694202‑M1/29‑1 (MQ=255)                                                                                                          tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAgg                                                                                                         >  2:493287/1‑86 (MQ=255)                                                                                                          tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAgg                                                                                                         <  1:493287/86‑1 (MQ=255)                                                                                                          tatTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCt                                         <  1:1200153/150‑1 (MQ=255)                                                                                                                   gCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtct                                <  1:291040/150‑1 (MQ=255)                                                                                                                   gCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCACTGTAGCAGGCACTTTCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtct                                >  1:1029153/1‑150 (MQ=255)                                                                                                                    ccATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTtctc                               >  1:753426/1‑150 (MQ=255)                                                                                                                      aTTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGAATTTCTCGa                             >  2:1256310/1‑150 (MQ=255)                                                                                                                       ttCTTGCTACCTGTAACTTAAAGCCGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGaa                            <  1:278049/150‑1 (MQ=255)                                                                                                                                 cTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCaa                                                                                                 <  2:810858/71‑1 (MQ=255)                                                                                                                                 cTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCaa                                                                                                 >  1:810858/1‑71 (MQ=255)                                                                                                                                      aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTc             <  2:1293231/150‑1 (MQ=255)                                                                                                                                      aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTc             <  2:1218112/150‑1 (MQ=255)                                                                                                                                      aCTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGAATTTCTCGAAGACTTCGATCTTGTc             <  1:1256310/150‑1 (MQ=255)                                                                                                                                        ttAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGc           >  2:593204/1‑150 (MQ=255)                                                                                                                                        ttAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGc           >  1:842370/1‑150 (MQ=255)                                                                                                                                                 cAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGa  <  2:753426/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACGGCGGTGATAGTCACCAGACCGACACGCGGATCCTTGACTTCGCGACGGATCAGCTCGGCCAGCTCGCGCTGCATCTGATCGCCAATACGTTGGGTACGGCTATATTCTTTGGCCATTCTTGCTACCTGTAACTTAAAGCGGCAAACGCCCGGACAGACGAATGCCTGACCGGGCGCTACCTGAAGAGGTACCGCAAGCCGCCCTGTAGCAGGCGCTTGCGGCTCGCTCGCCCTTAAAGGGTACGAGCCACCTGGACTTTCTCGAAGACTTCGATCTTGTCGCCGACCTTGA  >  NC_002947/5356033‑5356326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.