New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5359413 =	48 (0.910)	4 (0.080)	4/228	NT	9.6%	coding (905/1482 nt)	nusA	transcription termination/antitermination factor L
	?	NC_002947	5359462 =	31 (0.640)					coding (856/1482 nt)	nusA	transcription termination/antitermination factor L

GGTGCCTGCATCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5359567‑5359413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgatgaCGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGG  >  NC_002947/5359462‑5359602                                                                                                                                                                                                                                                                                                          GGTGCCTGCATCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTT                                                                                                                                                    <  1:1203822/150‑1    GCCTGCATCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGAGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGAT                                                                                                                                                 <  2:150609/150‑1      CTGCATCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGA                                                                                                                                               >  1:249192/1‑150           TCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGA                                                                                                                                               >  1:90180/1‑145           TCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGA                                                                                                                                               <  2:90180/145‑1                                                                                                       TTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTCGACGCGCGAACCACGCATGCCGAT                                              >  2:561174/1‑150                                                                                                             ATCAACGCCATGGCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGC                                        >  2:416167/1‑150                                                                                                                    CCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGA                                                                                                              <  1:642489/73‑1                                                                                                                    CCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGA                                                                                                              >  2:642489/1‑73                                                                                                                                                   CGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGG  <  1:1104767/150‑1                                                                                                                                                                                                                                                                                                          GGTGCCTGCATCGGCATGCGTGGTTCGCGCGTCCAGGCCGTATCCGGGGAGCTGGGTGGTGAGCGTGTGGATATCGTCCTTTGGGACGATAACCCGGCGCAGTTCGTCATCAACGCCATGTCGCCGGCTGAAGTCGCGGCGATCATCGTTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5359567‑5359413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgatgaCGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGG  >  NC_002947/5359462‑5359602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.