New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5359413 =	48 (0.910)	4 (0.080)	4/228	NT	9.6%	coding (905/1482 nt)	nusA	transcription termination/antitermination factor L
	?	NC_002947	5359462 =	31 (0.640)					coding (856/1482 nt)	nusA	transcription termination/antitermination factor L

GCTTGGCCTGGATGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAG  >  NC_002947/5359270‑5359562                                                                                                                                                |                                                                                                                                                      gCTTGGCCTGGATGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCaa                                                                                                                                                 >  2:1221577/1‑150 (MQ=255)  cTTGGCCTGGATGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAAc                                                                                                                                                <  2:502926/150‑1 (MQ=255)  cTTGGCCTGGATGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAAc                                                                                                                                                <  1:1298858/150‑1 (MQ=255)   ccgtccgctccaaggacaagcgtatcgacccgcaaggtgcctgcatcggcatgcgtggttcgcgcgtccaggccgtatccggggagctgggtggtgagcgtgtggatatcgtcctttgggacgataacccggcgcagttcgTCATCAACg                                                                                                                                               <  1:1104767‑M1/9‑1 (MQ=255)             tGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATcgccg                                                                                                                                     <  1:1348752/150‑1 (MQ=255)              gTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATcgccgc                                                                                                                                    <  2:1052006/150‑1 (MQ=255)              gTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATcgccgc                                                                                                                                    <  2:429245/150‑1 (MQ=255)                ccTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGa                                                                                                                                  <  2:536426/150‑1 (MQ=255)                 cTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATc                                                                                                                                         <  1:767332/142‑1 (MQ=255)                 cTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATc                                                                                                                                         >  2:767332/1‑142 (MQ=255)                     tcGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCa                                                                                                                             <  1:1221577/150‑1 (MQ=255)                        gTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGAATTCAGcc                                                                                                                          >  1:1268570/1‑150 (MQ=255)                            tcaCGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCg                                                                                                                      >  1:1346862/1‑150 (MQ=255)                            tcaCGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCg                                                                                                                      >  2:863269/1‑150 (MQ=255)                              aCGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGAc                                                                                                                    >  1:271731/1‑150 (MQ=255)                                gTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGGTCGCCGCGACTTCAGCCGGCGACAt                                                                                                                  <  2:505083/150‑1 (MQ=255)                                gTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACAt                                                                                                                  <  2:505043/150‑1 (MQ=255)                                   cAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGTCAATGGCCTGGGCCAGGTTGTCCTCGGCTACGGCGATGTCCATGGAATGGGAATCTTCATCAACGATGGTTGCCGCTACTTCAGCCGGCGACATGGc                                                                                                               <  2:375658/150‑1 (MQ=255)                                    aGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCa                                                                                                                             <  1:1204888/135‑1 (MQ=255)                                    aGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCa                                                                                                                             >  2:1204888/1‑135 (MQ=255)                                     gggTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGc                                                                                                               <  1:275088/148‑1 (MQ=255)                                     gggTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGc                                                                                                               >  2:275088/1‑148 (MQ=255)                                         gcctgcatcggcatgcgtggttcgcgcgtccaggccgtatccggggagctgggtggtgagcgtgtggatatcgtcctttgggacgataacccggcgcagttcgTCATCAACGATGATCGCCGCGACTTCAGCCGGCGCCATGGCGTtgat                                                                                                         >  2:416167‑M1/104‑150 (MQ=255)                                           aGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGACAATGGCCTGGGCTAGGTTGTCCTCGGCGACGGCGACGTCCATGGCATGGGCAGCTTCATCAACAAGAATCGCCGCGACTTCAGCCGGCGACATGGCGTagatga                                                                                                       <  2:117497/150‑1 (MQ=255)                                            gCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGAc                                                                                                      <  1:1322009/150‑1 (MQ=255)                                               atcggcatgcgtggttcgcgcgtcgaggccgtatccggggagctgggtggtgagcgtgtggatatcgtcctttgggacgataacccggcgcagttcgTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGaa                                                                                                   >  2:561174‑M1/98‑150 (MQ=255)                                                        actgGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAAc                                                                                                                                                >  1:427755/1‑96 (MQ=255)                                                        actgGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAAc                                                                                                                                                <  2:427755/96‑1 (MQ=255)                                                              cAGGCGAACGTGCTGACCGCCACGGCCAGTGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATc                                                                                    <  2:1035600/150‑1 (MQ=255)                                                                 gCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTc                                                                                 <  1:1077710/150‑1 (MQ=255)                                                                  cGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTcc                                                                                <  1:227645/150‑1 (MQ=255)                                                                   gAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTccc                                                                               <  2:1346862/150‑1 (MQ=255)                                                                    aaCGTTCTGCCCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCa                                                                              >  2:451769/1‑150 (MQ=255)                                                                          cTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTAGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATCGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGAc                                                                        <  2:1378190/150‑1 (MQ=255)                                                                             aCCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGat                                                                     >  1:607629/1‑150 (MQ=255)                                                                                 ccACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATcc                                                                 <  2:1163679/150‑1 (MQ=255)                                                                                        cAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCt                                                          >  2:1252158/1‑150 (MQ=255)                                                                                           tGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTcac                                                       <  2:607629/150‑1 (MQ=255)                                                                                                tGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCAccc                                                  >  2:1010930/1‑150 (MQ=255)                                                                                                  ggCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAg                                                >  2:1222033/1‑150 (MQ=255)                                                                                                  ggCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAg                                                <  1:1331479/150‑1 (MQ=255)                                                                                                             ccTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATa                                     <  1:1222033/150‑1 (MQ=255)                                                                                                              cTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTcaccac                                                    <  2:250166/134‑1 (MQ=255)                                                                                                              cTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTcaccac                                                    >  1:250166/1‑134 (MQ=255)                                                                                                               tcgtcctttgggacgataacccggcgcagttcgTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATgg                                                                                                                <  1:642489‑M1/40‑1 (MQ=255)                                                                                                               tcgtcctttgggacgataacccggcgcagttcgTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATgg                                                                                                                >  2:642489‑M1/34‑73 (MQ=255)                                                                                                                      tggcgaTGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGa                            <  1:451769/149‑1 (MQ=255)                                                                                                                       ggcgaTGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGAc                           >  2:1104767/1‑150 (MQ=255)                                                                                                                             gcccatgccatgGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGa                     >  2:249192/3‑150 (MQ=255)                                                                                                                               ccATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGGTCCCCGGATACGGCCTGGACGCGCGAAc                   >  1:1071301/1‑150 (MQ=255)                                                                                                                                catggcatggGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACt                                                                                                 <  2:306886/71‑1 (MQ=255)                                                                                                                                catggcatggGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACt                                                                                                 >  1:306886/1‑71 (MQ=255)                                                                                                                                    gcatggGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGc              <  2:1071301/150‑1 (MQ=255)                                                                                                                                            aTCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGAt      >  2:741455/1‑150 (MQ=255)                                                                                                                                                TCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGa       >  1:90180‑M1/1‑145 (MQ=255)                                                                                                                                                TCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGa       <  2:90180‑M1/145‑1 (MQ=255)                                                                                                                                                TCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAg  >  1:249192‑M1/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                      GCTTGGCCTGGATGTCCTTCTCGGTCATCACGTTCAGGGTCCAGCCGGTCAACTGACTGGCCAGGCGAACGTTCTGACCGCCACGGCCAATGGCCTGGGCCAGGTTGTCCTCGGCGACGGCGATGTCCATGGCATGGGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAG  >  NC_002947/5359270‑5359562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.