New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5507448	61 (1.160)	3 (0.060)	3/236	NT	5.1%	coding (661/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5507479	54 (1.070)					coding (692/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease

CTGGTCGCTACCGGCCTGTACATGGTCATCACCGGCTTCACCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5507295‑5507448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAAGGCGAACACGGCGATCTGGAAACCGGCGAAGAAGCCCATCAGGCCATGGGGGAACATGCCGCCGTCATTCCACAGGTTGGCCAGCTGGGCGGTGCGCCCGCTGGGCGAGGT  <  NC_002947/5507479‑5507334                                                                                                                                                                                                                                                                                                              CTGGTCGCTACCGGCCTGTACATGGTCATCACCGGCTTCACCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCC                                                                                                                                                        >  2:920948/1‑150                                        ACCTCTCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAA                                                                                                                 <  1:697008/150‑1                                           TCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAAG                                                                                                                <  1:1184956/148‑1                                           TCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAAG                                                                                                                >  2:1184956/1‑148                                                                                                                                                       TTCGGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAAGGCGAACACGGCGATCTGGAAACCGGCGAAGAAGCCCATCAGGCCATGGGGGAACATGCCGCCGTCATTCCACAGGTTGGCCAGCTGGGCGGTGCGCCCGCTGGGCGAGGT  >  1:1350095/1‑150                                                                                                                                                                                                                                                                                                              CTGGTCGCTACCGGCCTGTACATGGTCATCACCGGCTTCACCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5507295‑5507448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgGCGGCGGTGGTACCCACCAGCTCGATGCCGACGAAGGCGAACACGGCGATCTGGAAACCGGCGAAGAAGCCCATCAGGCCATGGGGGAACATGCCGCCGTCATTCCACAGGTTGGCCAGCTGGGCGGTGCGCCCGCTGGGCGAGGT  <  NC_002947/5507479‑5507334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.