New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5507448	61 (1.160)	3 (0.060)	3/236	NT	5.1%	coding (661/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5507479	54 (1.070)					coding (692/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease

ACCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGA  >  NC_002947/5507334‑5507626                                                                                                                                                  |                                                                                                                                                    aCCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaa                                                                                                                                                 >  1:1350095‑M2/1‑146 (MQ=255) aCCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGCATAGGCCGGCCTGTTTCCAGATCGCCGTGTTAGCATTAGCAGGCATTGACCTGTGGGGTACCACCGCCGCcgaa                                                                                                                                                 >  1:247498/1‑150 (MQ=255)   cTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaagc                                                                                                                                               <  2:778662/150‑1 (MQ=255)   cTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaagc                                                                                                                                               >  1:252363/1‑150 (MQ=255)      gCCCAGCTGGCGCACCGTCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaagcgaa                                                                                                                                            <  2:452648/150‑1 (MQ=255)                cgcACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGaa                                                                                                                                  <  1:573420/150‑1 (MQ=255)                         cAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTg                                                                                                                         <  1:1057122/150‑1 (MQ=255)                                ccAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCggg                                                                                                                  <  2:1275760/150‑1 (MQ=255)                                 cAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGc                                                                                                                 >  2:1205398/1‑150 (MQ=255)                                   aCCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGa                                                                                                               <  1:552710/150‑1 (MQ=255)                                    ccTGTGGAATGGTGGGGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGAt                                                                                                              <  2:368861/150‑1 (MQ=255)                                     cTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTGCGACCGCCGCCGAAGCGGAGAACCCGGACAGGACCCTGCggcgggcgcgt                                                                                                             >  2:612737/1‑147 (MQ=255)                                       gtgGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCaa                                                                                                           <  1:939198/150‑1 (MQ=255)                                        tgGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAAc                                                                                                          <  1:612737/150‑1 (MQ=255)                                        tgGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAAc                                                                                                          <  2:252363/150‑1 (MQ=255)                                          gAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTc                                                                                                        >  1:817646/1‑150 (MQ=255)                                          gAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTc                                                                                                        >  2:125658/1‑150 (MQ=255)                                                  gcggcATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTcgatcccga                                                                                                <  2:1181616/150‑1 (MQ=255)                                                   cggcATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCa                                                                                                                              <  2:368711/119‑1 (MQ=255)                                                   cggcATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCa                                                                                                                              >  1:368711/1‑119 (MQ=255)                                                    ggcATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGAAGACAATCAACTcgatcccgatc                                                                                              >  1:73489/1‑150 (MQ=255)                                                     gaaTGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTcgatcccgatcc                                                                                             >  2:591290/3‑150 (MQ=255)                                                             ccccATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCa                                                                                                                              >  1:952157/1‑109 (MQ=255)                                                             ccccATGCCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCa                                                                                                                              <  2:952157/109‑1 (MQ=255)                                                               ccATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCgt                                                                                   <  2:627967/150‑1 (MQ=255)                                                                 aTGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCgtgt                                                                                 >  2:591478/1‑150 (MQ=255)                                                                      cTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTAt                                                                            >  2:288267/1‑150 (MQ=255)                                                                        gATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTAtgt                                                                          >  1:85663/1‑150 (MQ=255)                                                                         aTGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTAtgtg                                                                         <  1:7902/150‑1 (MQ=255)                                                                              cttcttCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGgc                                                                    <  2:85663/150‑1 (MQ=255)                                                                                 cttcGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGgcg                                                                   <  1:1160930/148‑1 (MQ=255)                                                                                 cttcGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGgcg                                                                   <  1:1161464/148‑1 (MQ=255)                                                                                 cttcGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGgcg                                                                   >  2:1160930/1‑148 (MQ=255)                                                                                 cttcGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGgcg                                                                   >  2:1161464/1‑148 (MQ=255)                                                                                   tcGCCGGTTTCCAGATCGCCGTGTTAGCCTTGGACTGCACCGAGCTTGGGGGGACCACCGCGCCCGAAGCGAAGCAACACCCCCGTTTCCGCCCGCAGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCGAGATGCTGGCGCGGa                                                               >  1:1034010/1‑150 (MQ=255)                                                                                     gCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTa                                                                             >  2:1328129/1‑134 (MQ=255)                                                                                     gCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTa                                                                             <  1:1328129/134‑1 (MQ=255)                                                                                     gCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATc                                                             <  1:1035636/150‑1 (MQ=255)                                                                                      ccGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTatca                                                                                       >  2:762733/1‑123 (MQ=255)                                                                                      ccGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTatca                                                                                       <  1:762733/123‑1 (MQ=255)                                                                                        ggTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATcgcg                                                          <  1:591478/150‑1 (MQ=255)                                                                                        ggTTTCCAGATCGCCGTGTTCGCCTGCGTCGGCATCGAGCTGGTGGGGACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATcgcg                                                          <  2:598270/150‑1 (MQ=255)                                                                                         gTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTg                                                                      <  1:185423/137‑1 (MQ=255)                                                                                         gTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTg                                                                      >  2:185423/1‑137 (MQ=255)                                                                                               aGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATgg                                                   >  2:1385219/1‑150 (MQ=255)                                                                                                     ccGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGa                                                                                                               <  2:932039/84‑1 (MQ=255)                                                                                                     ccGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGa                                                                                                               >  1:932039/1‑84 (MQ=255)                                                                                                     ccGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGa                                             >  2:1153645/1‑150 (MQ=255)                                                                                                             gCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGGCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGTTCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTgg                                                                     <  2:990508/118‑1 (MQ=255)                                                                                                             gCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTgg                                                                     >  1:990508/1‑118 (MQ=255)                                                                                                             gCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTgg                                                                     >  1:990379/1‑118 (MQ=255)                                                                                                             gCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTgg                                                                     <  2:990379/118‑1 (MQ=255)                                                                                                               cTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaaggcgaacacggcgatctggaaaccggcgaagaagcccatcaggccatgggggaacatgccgccgtcattccacaggttggccagctgggcggtgcgcccgctgggcga                                     >  2:1184956‑M2/1‑36 (MQ=255)                                                                                                               cTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaaggcgaacacggcgatctggaaaccggcgaagaagcccatcaggccatgggggaacatgccgccgtcattccacaggttggccagctgggcggtgcgcccgctgggcga                                     <  1:1184956‑M2/148‑113 (MQ=255)                                                                                                               cTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGgcg                                   <  2:247498/150‑1 (MQ=255)                                                                                                                ttCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCcgaaggcgaacacggcgatctggaaaccggcgaagaagcccatcaggccatgggggaacatgccgccgtcattccacaggttggccagctgggcggtgcgcccgctgggagaggt                                  <  1:697008‑M2/150‑116 (MQ=255)                                                                                                                   gtcgGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGAt                               <  2:1165646/150‑1 (MQ=255)                                                                                                                   gtcgGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGAt                               <  1:125658/150‑1 (MQ=255)                                                                                                                     cgGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGAtgt                             <  1:1153645/150‑1 (MQ=255)                                                                                                                      ggCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGAtgtg                            <  2:1034010/150‑1 (MQ=255)                                                                                                                      ggCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGAtgtg                            <  1:288267/150‑1 (MQ=255)                                                                                                                         aTCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGATgtggtg                         >  2:1326135/1‑150 (MQ=255)                                                                                                                                                cgccgAAGCGAAGAACCCGGAACGCACGCTACAGCAAGCGAGCAACGCGATCCCGATCCGTATCATCGTTGTCTCTCAGGCGGCCTTAAGAGCGATCAGGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGa  >  1:679033/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                    ACCTCGCCCAGCGGGCGCACCGCCCAGCTGGCCAACCTGTGGAATGACGGCGGCATGTTCCCCCATGGCCTGATGGGCTTCTTCGCCGGTTTCCAGATCGCCGTGTTCGCCTTCGTCGGCATCGAGCTGGTGGGTACCACCGCCGCCGAAGCGAAGAACCCGGAACGCACCCTGCCGCGGGCGATCAACTCGATCCCGATCCGTATCATCGTGTTCTATGTGCTGGCGCTGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGA  >  NC_002947/5507334‑5507626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.