| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5509196 = | 45 (0.860) | 3 (0.060) | 3/226 | NT | 7.9% | coding (753/1266 nt) | urtA | urea ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5509227 = | 29 (0.600) | coding (784/1266 nt) | urtA | urea ABC transporter substrate‑binding protein | |||||
GCCTTCCAGTCGGCGACAAACTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTGGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5509351‑5509196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCC > NC_002947/5509227‑5509371 GCCTTCCAGTCGGCGACAAACTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTG < 1:276376/150‑1GCCTTCCAGTCGGCGACAAACTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTG < 1:388676/150‑1GCCTTCCAGACGGCGACAAACTGCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTG > 2:88649/1‑150 TTCCAGTCGGCGACAAACTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTGGCC > 1:136178/1‑150 CTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACCGACGTGC‑CGGTGGTGGCCTTCTCGGTGGGCGAGGA < 1:940803/150‑1 GTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGT < 1:431424/57‑1 GTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGT > 2:431424/1‑57 GCCACC‑ACCGGCACGTCGGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCT > 1:365999/1‑83 GCCACC‑ACCGGCACGTCGGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCT < 2:365999/83‑1 GGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAAC < 1:716591/106‑1 GGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAAC > 2:716591/1‑106 CCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCC < 2:870701/150‑1 CTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACC > 1:189994/1‑95 CTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACC < 2:189994/95‑1 GCCTTCCAGTCGGCGACAAACTTCTGGTTGACCGGGTTATCCACCGATTCGAAGTAGTTCCACGCCGCCAGGTGGCCCACCAGCGGTTTGGTGTCGATGCCGCGCAGTTCCTCCTCGCCCACCGAGAAGGCCACC‑ACCGGCACGTCGGTGGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5509351‑5509196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCC > NC_002947/5509227‑5509371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |