| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5509196 = | 45 (0.860) | 3 (0.060) | 3/226 | NT | 7.9% | coding (753/1266 nt) | urtA | urea ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5509227 = | 29 (0.600) | coding (784/1266 nt) | urtA | urea ABC transporter substrate‑binding protein | |||||
ACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCC > NC_002947/5509078‑5509371 | aCCAGACCATCGTCGCCACCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAGTGGGGACTCCGACGTGCCGTTCGACAAGGAGCCGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTtct < 2:1312168/150‑1 (MQ=255) ccAGACCATTGTCGCCAGCATCAAAACGTTCTCGACCGGCAGCAAGACCGCGGTCATTTCCAGACTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑TGTGGCCTtctc < 2:1156152/150‑1 (MQ=255) cAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCg > 1:349365/1‑150 (MQ=255) aCCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTg > 1:217376/1‑150 (MQ=255) tGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCga < 2:1162387/150‑1 (MQ=255) cttctggttgaccgggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgagaaggccaccgacgtgccggtggtggccttcTCGGTGGGCgagga < 1:940803‑M2/14‑1 (MQ=255) aaGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGc > 2:123203/1‑150 (MQ=255) gTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCAt < 1:557599/150‑1 (MQ=255) ttCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTCCAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGGACTGCGCGGCATc > 1:346964/1‑150 (MQ=255) tcCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGac > 1:584657/1‑150 (MQ=255) ggcggcAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCaaa < 2:1195122/150‑1 (MQ=255) cAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGCTCATCACCGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCt < 1:737931/150‑1 (MQ=255) ccGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGTCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtggtgg < 2:584657/150‑1 (MQ=255) tttCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTgg > 2:136178/1‑150 (MQ=255) aGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTg < 1:112586/150‑1 (MQ=255) gcAATGGTGACTCCCACGTGCCGTTCTACAAGGAAGTGGCCGACCAGGGCGTAAAGGCCACCGACGGGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCAGCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGa < 2:621582/149‑1 (MQ=255) gTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAactact > 1:1312907/1‑150 (MQ=255) tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCCAGCTCGTGGTAGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa > 2:1416880/1‑150 (MQ=255) tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa > 1:165919/1‑150 (MQ=255) tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa > 1:472438/1‑150 (MQ=255) cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtg > 1:892377/1‑115 (MQ=255) cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtg < 2:892377/115‑1 (MQ=255) cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATc > 1:1070301/1‑150 (MQ=255) aaCGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCg < 1:55789/150‑1 (MQ=255) tACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCg > 1:355413/1‑150 (MQ=255) tACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGACGAGGCACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCg > 2:48473/1‑150 (MQ=255) aCAAGGAACTGGTCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCAAATTAGCTACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTCATTCGAATCGGTGG‑ATAACCCgg > 1:88649/1‑150 (MQ=255) aCAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCgg < 1:123203/150‑1 (MQ=255) tGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGa > 2:1384679/1‑150 (MQ=255) tcctcgcccaccgaGAAGGCCACCACCG‑GCACGTCGGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAg < 1:940803‑M1/136‑1 (MQ=255) ccAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑At < 1:1309608/127‑1 (MQ=255) ccAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑At > 2:1309608/1‑127 (MQ=255) tGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGTGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAAcc < 1:870462/123‑1 (MQ=255) tGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGTGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAAcc > 2:870462/1‑123 (MQ=255) GGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGaa > 1:136178‑M1/1‑150 (MQ=255) gccaccaccggcacgtcggtggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCt < 2:365999‑M2/56‑1 (MQ=255) gccaccaccggcacgtcggtggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCt > 1:365999‑M2/28‑83 (MQ=255) CACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGCAGTTTGTCGCCGTCTGGAAGGc > 2:88649‑M1/1‑150 (MQ=255) CACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGc < 1:276376‑M1/150‑1 (MQ=255) CACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGc < 1:388676‑M1/150‑1 (MQ=255) ACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGac > 2:431424‑M1/1‑57 (MQ=255) ACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGac < 1:431424‑M1/57‑1 (MQ=255) t‑ggtggCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACgccaaggcca > 1:870701/1‑150 (MQ=255) tggCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTCATACGCACCAGAGCAATCAAACGAT‑ATTCATGAGGTTGTCGCCGACTGGAAGGCCTACGccaaggccaagg > 1:167935/1‑150 (MQ=255) ggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAAc > 2:716591‑M2/8‑106 (MQ=255) ggccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAAc < 1:716591‑M2/99‑1 (MQ=255) ccttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGcc < 2:870701‑M2/145‑1 (MQ=255) cttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAAcc > 1:189994‑M2/5‑95 (MQ=255) cttcTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAAcc < 2:189994‑M2/91‑1 (MQ=255) | ACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGG‑ATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCC > NC_002947/5509078‑5509371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |