New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5509196 =	45 (0.860)	3 (0.060)	3/226	NT	7.9%	coding (753/1266 nt)	urtA	urea ABC transporter substrate‑binding protein
	?	NC_002947	5509227 =	29 (0.600)					coding (784/1266 nt)	urtA	urea ABC transporter substrate‑binding protein

GTGTACACGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAG  >  NC_002947/5509050‑5509331                                                                                                                                                   |                                                                                                                                         gtgtACACGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAg                                                                                                                                       <  2:401907/150‑1 (MQ=255) gtgtACACGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAg                                                                                                                                       >  1:401907/1‑150 (MQ=255) gtgtACACGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAg                                                                                                                                       >  1:621582/1‑150 (MQ=255)  ggcccttggccttggcgtaggccttccagtcggcgacaaacttctggttgaccgggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAgg                                                                                                                                      <  2:870701‑M1/5‑1 (MQ=255)      cacGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCAc                                                                                                                                  <  2:778247/150‑1 (MQ=255)       acGCCGTTTGGCCACGCTGATTACCAGNCCATTGTCGCCANCATCAANAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGCCCACAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCAcc                                                                                                                                 >  1:1156152/1‑150 (MQ=255)         gCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGa                                                                                                                               >  1:1162387/1‑150 (MQ=255)                 gCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCgg                                                                                                                       >  1:1410354/1‑150 (MQ=255)                    aCGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCg                                                                                                                        <  1:1334074/146‑1 (MQ=255)                    aCGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCg                                                                                                                        >  2:1334074/1‑146 (MQ=255)                      gCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGgt‑ggtg                                                                                                                 <  1:1052297/150‑1 (MQ=255)                      gCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGgt‑ggtg                                                                                                                 >  2:1052297/1‑150 (MQ=255)                          cttACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCt                                                                                                             <  2:425195/149‑1 (MQ=255)                             aCCAGACCATCGTCGCCACCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAGTGGGGACTCCGACGTGCCGTTCGACAAGGAGCCGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTtct                                                                                                          <  2:1312168/150‑1 (MQ=255)                              ccAGACCATTGTCGCCAGCATCAAAACGTTCTCGACCGGCAGCAAGACCGCGGTCATTTCCAGACTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑TGTGGCCTtctc                                                                                                         <  2:1156152/150‑1 (MQ=255)                               cAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCggt‑g                                                                                                                    <  2:949898/138‑1 (MQ=255)                               cAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCggt‑g                                                                                                                    >  1:949898/1‑138 (MQ=255)                               cAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCg                                                                                                        >  1:349365/1‑150 (MQ=255)                                  aCCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTg                                                                                                     >  1:217376/1‑150 (MQ=255)                                       tGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCga                                                                                                <  2:1162387/150‑1 (MQ=255)                                                gttgaccgggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAGGcc                                                                                                                                    >  2:716591‑M1/100‑106 (MQ=255)                                                gttgaccgggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAGGcc                                                                                                                                    <  1:716591‑M1/7‑1 (MQ=255)                                                       aaGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGc                                                                                >  2:123203/1‑150 (MQ=255)                                                        ggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAg                                                                                                                                       <  2:189994‑M1/4‑1 (MQ=255)                                                        ggttatccaccgattcgaagtagttccacgccgccaggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAg                                                                                                                                       >  1:189994‑M1/92‑95 (MQ=255)                                                         gTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCAt                                                                              <  1:557599/150‑1 (MQ=255)                                                          ttCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTCCAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGGACTGCGCGGCATc                                                                             >  1:346964/1‑150 (MQ=255)                                                             tcCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGac                                                                          >  1:584657/1‑150 (MQ=255)                                                                   ggcggcAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCaaa                                                                    <  2:1195122/150‑1 (MQ=255)                                                                        cAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGCTCATCACCGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCt                                                               <  1:737931/150‑1 (MQ=255)                                                                         aaGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGc                                                                                                               <  1:172049/101‑1 (MQ=255)                                                                         aaGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGc                                                                                                               >  2:172049/1‑101 (MQ=255)                                                                            aCCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCAc                                                                                                                                  >  2:93363/1‑80 (MQ=255)                                                                            aCCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCAc                                                                                                                                  <  1:93363/80‑1 (MQ=255)                                                                             ccGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGTCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtggtgg                                                          <  2:584657/150‑1 (MQ=255)                                                                                      tttCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTgg                                                 >  2:136178/1‑150 (MQ=255)                                                                                           aggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAGGCCACCGACGTGCCGGT‑GGTGGc                                                                                                               >  1:365999‑M1/57‑83 (MQ=255)                                                                                           aggtggcccaccagcggtttggtgtcgatgccgcgcagttcctcctcgcccaccgaGAAGGCCACCGACGTGCCGGT‑GGTGGc                                                                                                               <  2:365999‑M1/27‑1 (MQ=255)                                                                                             aGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTg                                          <  1:112586/150‑1 (MQ=255)                                                                                               gcAATGGTGACTCCCACGTGCCGTTCTACAAGGAAGTGGCCGACCAGGGCGTAAAGGCCACCGACGGGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCAGCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGa                                        <  2:621582/149‑1 (MQ=255)                                                                                                     gTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAactact                                  >  1:1312907/1‑150 (MQ=255)                                                                                                          tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCCAGCTCGTGGTAGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa                             >  2:1416880/1‑150 (MQ=255)                                                                                                          tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa                             >  1:472438/1‑150 (MQ=255)                                                                                                          tCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGaa                             >  1:165919/1‑150 (MQ=255)                                                                                                            cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtg                                                              >  1:892377/1‑115 (MQ=255)                                                                                                            cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCtg                                                              <  2:892377/115‑1 (MQ=255)                                                                                                            cAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATc                           >  1:1070301/1‑150 (MQ=255)                                                                                                             aaCGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCg                          <  1:55789/150‑1 (MQ=255)                                                                                                                         tACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCg              >  1:355413/1‑150 (MQ=255)                                                                                                                         tACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGACGAGGCACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCg              >  2:48473/1‑150 (MQ=255)                                                                                                                          aCAAGGAACTGGTCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCAAATTAGCTACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTCATTCGAATCGGTGGATAACCCgg             >  1:88649/1‑150 (MQ=255)                                                                                                                          aCAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCgg             <  1:123203/150‑1 (MQ=255)                                                                                                                                   tGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGa    >  2:1384679/1‑150 (MQ=255)                                                                                                                                     tcctcgcccaccgaGAAGGCCACCACCG‑GCACGTCGGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAg  <  1:940803‑M1/136‑1 (MQ=255)                                                                                                                                          ccAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGAt                    <  1:1309608/127‑1 (MQ=255)                                                                                                                                          ccAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGAt                    >  2:1309608/1‑127 (MQ=255)                                                                                                                                                  tGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGTGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAAcc                <  1:870462/123‑1 (MQ=255)                                                                                                                                                  tGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGTGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAAcc                >  2:870462/1‑123 (MQ=255)                                                                                                                                                   |                                                                                                                                         GTGTACACGCCGTTTGGCCACGCTGATTACCAGACCATTGTCGCCAGCATCAAAAAGTTCTCCGCCGGCGGCAAGACCGCGGTCATTTCCACAGTCAATGGTGACTCCAACGTGCCGTTCTACAAGGAACTGGCCAACCAGGGCCTGAAGGCCACCGACGTGCCGGT‑GGTGGCCTTCTCGGTGGGCGAGGAGGAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAG  >  NC_002947/5509050‑5509331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.