New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5510502 =	49 (0.930)	5 (0.100)	5/234	NT	11.2%	coding (653/1488 nt)	urtB	urea ABC transporter permease
	?	NC_002947	5510551 =	33 (0.660)					coding (702/1488 nt)	urtB	urea ABC transporter permease

CGGCAGGGCAATCAGCGGGTAGAACTCGATGGCGCCTGGGGCGAAGCGCTGCAGCAGTACCTGGACCATGTAGGTGCTGTAGGCGCCGAGCATCAACATCTCGCCATGGGCCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5510656‑5510502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAG  >  NC_002947/5510551‑5510698                                                                                                                                                                                                                                                                                                                 CGGCAGGGCAATCAGCGGGTAGAACTCGATGGCGCCTGGGGCGAAGCGCTGCAGCAGTACCTGGACCATGTAGGTGCTGTAGGCGCCGAGCATCAACATCTCGCCATGGGCCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAG                                                                                                                                                           >  2:1209630/1‑150                                                                                                              GCCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGC                                              >  2:524025/1‑150                                                                                                               CCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCA                                                                                             >  1:1372265/1‑102                                                                                                               CCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCA                                                                                             <  2:1372265/102‑1                                                                                                                CATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCA                                                                                                         <  1:379342/89‑1                                                                                                                CATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCA                                                                                                         >  2:379342/1‑89                                                                                                                                                         CCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTG                                         <  1:1006064/112‑1                                                                                                                                                         CCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTG                                         >  2:1006064/1‑112                                                                                                                                                         CCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTGCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTACCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGA   >  2:1025883/1‑150                                                                                                                                                          CATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAG  >  2:1120229/1‑150                                                                                                                                                                                                                                                                                                                 CGGCAGGGCAATCAGCGGGTAGAACTCGATGGCGCCTGGGGCGAAGCGCTGCAGCAGTACCTGGACCATGTAGGTGCTGTAGGCGCCGAGCATCAACATCTCGCCATGGGCCATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5510656‑5510502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAG  >  NC_002947/5510551‑5510698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.