New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5510502 =	49 (0.930)	5 (0.100)	5/234	NT	11.2%	coding (653/1488 nt)	urtB	urea ABC transporter permease
	?	NC_002947	5510551 =	33 (0.660)					coding (702/1488 nt)	urtB	urea ABC transporter permease

GCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAG  >  NC_002947/5510406‑5510698                                                                                                                                                  |                                                                                                                                                    gCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCg                                                                                                                                                 >  1:221494/1‑150 (MQ=255)   cTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGACCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCgag                                                                                                                                               <  1:331207/150‑1 (MQ=255)      gCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCAATGGCGAGATg                                                                                                                                            <  2:1349540/150‑1 (MQ=255)        ccAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGtt                                                                                                                                          >  1:1353913/1‑150 (MQ=255)         cAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTg                                                                                                                                         <  2:1323293/150‑1 (MQ=255)          aGGTCAAGCGCAAACTGGTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGa                                                                                                                                        <  2:424485/150‑1 (MQ=255)          aGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGa                                                                                                                                        <  1:911240/150‑1 (MQ=255)          aGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGa                                                                                                                                        <  2:221494/150‑1 (MQ=255)                         tgctgcTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGTGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACa                                                                                                                         >  1:633445/1‑150 (MQ=255)                             gctAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCAc                                                                                                                     >  2:433800/1‑150 (MQ=255)                                   cGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACAt                                                                                                               >  1:270072/1‑150 (MQ=255)                                          cTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAg                                                                                                        <  2:1346966/150‑1 (MQ=255)                                                   gCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTActgctg                                                                                               >  1:192997/1‑150 (MQ=255)                                                     cTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACCGCCCCTACATGGTCCAGTTAcggctgtt                                                                                             <  2:668211/150‑3 (MQ=255)                                                      ttCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAg                                                                                            >  1:1209630/1‑150 (MQ=255)                                                                tGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATg                                                                                                              <  1:1081547/122‑1 (MQ=255)                                                                tGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATg                                                                                                              >  2:1081547/1‑122 (MQ=255)                                                                tGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGACTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGATCGGCGCATACAGCACCTACATGGTCAAGGTACTGCTGCAGCGCTTCGccc                                                                                  >  1:1393348/1‑150 (MQ=255)                                                                     cTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGgc                                                                             <  1:407325/150‑1 (MQ=255)                                                                        ggTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGcc                                                                          <  2:528479/150‑1 (MQ=255)                                                                              gTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGAGCCagggag                                                                    >  1:60400/1‑145 (MQ=255)                                                                               tCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCt                                                                                        <  2:869559/129‑1 (MQ=255)                                                                               tCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCt                                                                                        >  1:869559/1‑129 (MQ=255)                                                                               tCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGt                                                                   >  2:444874/1‑150 (MQ=255)                                                                                   gctgctgGCAGCGCTGGGCCTTGTGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTa                                                               <  2:633445/150‑1 (MQ=255)                                                                                        tgGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGc                                                          >  1:1082031/1‑150 (MQ=255)                                                                                               gcTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGt                                                                   <  2:643106/134‑1 (MQ=255)                                                                                               gcTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGt                                                                   >  1:643106/1‑134 (MQ=255)                                                                                                cTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGcc                                                  >  1:380928/1‑150 (MQ=255)                                                                                                    gccatgttgatcaccccgagcaggccgaaggtgatcgcaaggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGc                                              >  2:524025‑M2/47‑150 (MQ=255)                                                                                                     ccatgttgatcaccccgagcaggccgaaggtgatcgcaaggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCa                                                                                             <  2:1372265‑M2/57‑1 (MQ=255)                                                                                                     ccatgttgatcaccccgagcaggccgaaggtgatcgcaaggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCa                                                                                             >  1:1372265‑M2/46‑102 (MQ=255)                                                                                                      catgttgatcaccccgagcaggccgaaggtgatcgcaaggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCa                                                                                                         >  2:379342‑M2/45‑89 (MQ=255)                                                                                                      catgttgatcaccccgagcaggccgaaggtgatcgcaaggcccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCa                                                                                                         <  1:379342‑M2/45‑1 (MQ=255)                                                                                                      CTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCg                                            >  2:1209630‑M1/1‑150 (MQ=255)                                                                                                                  ttCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGcc                                <  1:951719/150‑1 (MQ=255)                                                                                                                         tGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACAt                                                                                                               <  1:71602/64‑1 (MQ=255)                                                                                                                         tGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACAt                                                                                                               >  2:71602/1‑64 (MQ=255)                                                                                                                          gCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGc                        >  1:423175/1‑150 (MQ=255)                                                                                                                             cGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCgg                     <  2:1353913/150‑1 (MQ=255)                                                                                                                                        aCATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATgg          >  1:1331290/1‑150 (MQ=255)                                                                                                                                         cATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGGGCTTCCCCCCATGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGgc         <  2:192997/150‑1 (MQ=255)                                                                                                                                               ccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTg                                         <  1:1006064‑M2/109‑1 (MQ=255)                                                                                                                                               ccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTg                                         >  2:1006064‑M2/4‑112 (MQ=255)                                                                                                                                               ccaTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTGCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTACCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGa   >  2:1025883‑M2/4‑150 (MQ=255)                                                                                                                                                caTGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAg  >  2:1120229‑M2/3‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCCAGGCCTTCAGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGAGATGTTGATGCTCGGCGCCTACAGCACCTACATGGTCCAGGTACTGCTGCAGCGCTTCGCCCCAGGCGCCATCGAGTTCTACCCGCTGATTGCCCTGCCGGTGGCCTTCGCCGTCAGTGCCGGGGTAGGCATGGCGCTGGAG  >  NC_002947/5510406‑5510698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.