New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5555427	49 (0.930)	3 (0.060)	3/238	NT	6.1%	coding (146/459 nt)	PP_4887	hypothetical protein
	?	NC_002947	= 5555453	45 (0.890)					coding (120/459 nt)	PP_4887	hypothetical protein

GCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5555275‑5555427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaCGTCCCCGGCTGGCTGGCCCGGGCCTTCCGCA  <  NC_002947/5555453‑5555422                                                                                                                                                                                           GCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGC                                     <  1:126136/150‑1  CGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCG                                    <  1:404540/150‑1   GAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGG                                   >  2:1215092/1‑150       TCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGACGT                               >  2:86924/1‑150                                    TCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGACGTCCCCGGCTGGCTGGCCCGGGCCTTCCGCA  <  1:86924/150‑1                                                     CAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGACGTCCCCGGCTGGCTGGCCCGGGCCTTC      <  1:716677/129‑1                                                     CAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGACGTCCCCGGCTGGCTGGCCCGGGCCTTC      >  2:716677/1‑129                                                                                                                                                                                           GCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5555275‑5555427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaCGTCCCCGGCTGGCTGGCCCGGGCCTTCCGCA  <  NC_002947/5555453‑5555422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.