New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5555427	49 (0.930)	3 (0.060)	3/238	NT	6.1%	coding (146/459 nt)	PP_4887	hypothetical protein
	?	NC_002947	= 5555453	45 (0.890)					coding (120/459 nt)	PP_4887	hypothetical protein

TGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGC  >  NC_002947/5555317‑5555599                                                                                                                                         |                                                                                                                                                    tGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATgg                                                                                                                                        >  2:291877/1‑150 (MQ=255)   aagaagTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGgcg                                                                                                                                      >  1:225134/1‑150 (MQ=255)        gTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTa                                                                                                                                 >  2:874676/1‑150 (MQ=255)        gTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTa                                                                                                                                 <  1:310994/150‑1 (MQ=255)           cAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGc                                                                                                                              <  2:384374/150‑1 (MQ=255)             ggCGCTCAACGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCtt                                                                                                                            <  2:969490/150‑1 (MQ=255)                gcTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCa                                                                                                                         >  1:465743/1‑150 (MQ=255)                    aCCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGc                                                                                                                     >  2:628563/1‑150 (MQ=255)                    aCCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGc                                                                                                                     >  1:380860/1‑150 (MQ=255)                     ccGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCg                                                                                                                    <  1:1215092/150‑1 (MQ=255)                     ccGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCCACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCg                                                                                                                    <  1:1363005/150‑1 (MQ=255)                           gCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATc                                                                                                              <  1:624035/150‑1 (MQ=255)                             tGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCgg                                                                                                            <  1:628563/150‑1 (MQ=255)                               gCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGt                                                                                                          >  1:266508/1‑150 (MQ=255)                                 acaTGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                                        >  1:731500/1‑150 (MQ=255)                                    tGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTAAggg                                                                                                     >  2:576026/1‑148 (MQ=255)                                     gCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGa                                                                                                    >  1:1245393/1‑150 (MQ=255)                                      cATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAg                                                                                                   <  2:272828/150‑1 (MQ=255)                                                    gAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCTCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCAc                                                                                    <  2:621257/150‑1 (MQ=255)                                                            ccGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAgg                                                                            >  2:592526/1‑150 (MQ=255)                                                            ccGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCACGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGAGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAgg                                                                            >  2:593232/1‑150 (MQ=255)                                                               tGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGNANGNCGGTCATCGGGTCANNGAGCCGTACG‑CTGTCACTGTGCAGGaaa                                                                         <  1:923372/150‑1 (MQ=255)                                                                 gATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAAtt                                                                       <  1:874676/150‑1 (MQ=255)                                                                    atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAg                                                                    <  1:953881/150‑1 (MQ=255)                                                                    atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAg                                                                    <  2:266508/150‑1 (MQ=255)                                                                    atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAg                                                                    <  2:225134/150‑1 (MQ=255)                                                                       ggCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTc                                                                 <  1:593232/150‑1 (MQ=255)                                                                       ggCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTc                                                                 <  1:592526/150‑1 (MQ=255)                                                                        gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGt                                                                                                      <  1:238833/113‑1 (MQ=255)                                                                        gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGt                                                                                                      >  2:238833/1‑113 (MQ=255)                                                                        gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCg                                                                >  1:1317984/1‑150 (MQ=255)                                                                          gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGt                                                                                                                                             >  2:592474/1‑72 (MQ=255)                                                                          gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGt                                                                                                                                             <  1:592474/72‑1 (MQ=255)                                                                          gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGc                                                              <  1:291877/150‑1 (MQ=255)                                                                             aTTGAAACGCGGTGAGATAAAGTCGCGAATGCGGAAGCCCCGGGCCAGCCAGTCGGGGACGTCCGCGGACCTGGCGCCATACGCTTACAGGGCGGACATCGGGTCAGTGAGCCGTACG‑CTGACCCTGTGCAGGAAATTCAGGTCGGCCTg                                                           >  2:172887/1‑150 (MQ=255)                                                                                gAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCATCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTgggg                                                        >  1:330599/1‑149 (MQ=255)                                                                                      gCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGAt                                                  <  2:465743/150‑1 (MQ=255)                                                                                        gTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTa                                                >  1:1068255/1‑150 (MQ=255)                                                                                              tAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                                        <  2:475001/89‑1 (MQ=255)                                                                                              tAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                                        >  1:475001/1‑89 (MQ=255)                                                                                                     gcgAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCCGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGCAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAt                                   <  1:1358698/150‑1 (MQ=255)                                                                                                       gAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGa                                 <  2:1317984/150‑1 (MQ=255)                                                                                                          tGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctggacttcttcactgtcga                               <  1:86924‑M2/150‑119 (MQ=255)                                                                                                              gAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctg                                                <  1:716677‑M2/129‑102 (MQ=255)                                                                                                              gAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctg                                                >  2:716677‑M2/1‑28 (MQ=255)                                                                                                               aaGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTcc                         >  1:314996/1‑150 (MQ=255)                                                                                                                   cccGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCtttt                     >  2:1238908/1‑150 (MQ=255)                                                                                                                          cagccagcCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGAGTAGTCGGGCGGACATGAGCAACTCCTTTTGTCAtgt              <  2:731500/150‑1 (MQ=255)                                                                                                                          cagccagcCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCAAAGGGTCCGTGAGCCGTCCGACTCT‑GCTGTGCAGGGAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCAtgt              >  1:883704/1‑150 (MQ=255)                                                                                                                                    gggACGTTCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACCATGCAGGAATTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACa    <  1:172887/150‑1 (MQ=255)                                                                                                                                      gACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGc  <  2:1245393/150‑1 (MQ=255)                                                                                                                                       aCGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctggacttcttcactgtcgagaccatcagcgaccagcagctggtgctga  >  2:86924‑M2/1‑3 (MQ=255)                                                                                                                                         |                                                                                                                                                    TGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACG‑CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGC  >  NC_002947/5555317‑5555599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.