New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5555427	49 (0.930)	3 (0.060)	3/238	NT	6.1%	coding (146/459 nt)	PP_4887	hypothetical protein
	?	NC_002947	= 5555453	45 (0.890)					coding (120/459 nt)	PP_4887	hypothetical protein

TCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCC  >  NC_002947/5555281‑5555576                                                                                                                                                   |                                                                                                                                                      tCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAcgt                                                                                                                                                    >  2:86924‑M1/1‑147 (MQ=255)        cAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgc                                                                                                                                             >  2:624035/1‑150 (MQ=255)            tgctgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgccagc                                                                                                                                         <  2:927231/150‑1 (MQ=255)               tgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGccagccag                                                                                                                                      >  2:310994/1‑150 (MQ=255)                  tCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCg                                                                                                                                   >  1:384374/1‑150 (MQ=255)                     cTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCgggg                                                                                                                                >  2:923372/1‑150 (MQ=255)                              tcGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAcgtccccggctggctggcccgggccttccgca                                                                                                                       <  1:86924‑M1/150‑33 (MQ=255)                                     tGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATgg                                                                                                                >  2:291877/1‑150 (MQ=255)                                       aagaagTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGgcg                                                                                                              >  1:225134/1‑150 (MQ=255)                                            gTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTa                                                                                                         >  2:874676/1‑150 (MQ=255)                                            gTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTa                                                                                                         <  1:310994/150‑1 (MQ=255)                                               cAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAcgtccccggctggctggcccgggccttc                                                                                                                           <  1:716677‑M1/129‑29 (MQ=255)                                               cAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAcgtccccggctggctggcccgggccttc                                                                                                                           >  2:716677‑M1/1‑101 (MQ=255)                                               cAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGc                                                                                                      <  2:384374/150‑1 (MQ=255)                                                 ggCGCTCAACGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCtt                                                                                                    <  2:969490/150‑1 (MQ=255)                                                    gcTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCa                                                                                                 >  1:465743/1‑150 (MQ=255)                                                        aCCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGc                                                                                             >  1:380860/1‑150 (MQ=255)                                                        aCCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGc                                                                                             >  2:628563/1‑150 (MQ=255)                                                         ccGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCg                                                                                            <  1:1215092/150‑1 (MQ=255)                                                         ccGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCCACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCg                                                                                            <  1:1363005/150‑1 (MQ=255)                                                               gCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATc                                                                                      <  1:624035/150‑1 (MQ=255)                                                                 tGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCgg                                                                                    <  1:628563/150‑1 (MQ=255)                                                                   gCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGt                                                                                  >  1:266508/1‑150 (MQ=255)                                                                     acaTGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                >  1:731500/1‑150 (MQ=255)                                                                        tGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTAAggg                                                                             >  2:576026/1‑148 (MQ=255)                                                                         gCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGa                                                                            >  1:1245393/1‑150 (MQ=255)                                                                          cATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAg                                                                           <  2:272828/150‑1 (MQ=255)                                                                               gATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgcca                                                                                                                                           >  1:1090974/1‑81 (MQ=255)                                                                               gATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgcca                                                                                                                                           <  2:1090974/81‑1 (MQ=255)                                                                                        gAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCTCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCAc                                                             <  2:621257/150‑1 (MQ=255)                                                                                                ccGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAgg                                                     >  2:592526/1‑150 (MQ=255)                                                                                                ccGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCACGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGAGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAgg                                                     >  2:593232/1‑150 (MQ=255)                                                                                                   tGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGNANGNCGGTCATCGGGTCANNGAGCCGTACGCTGTCACTGTGCAGGaaa                                                  <  1:923372/150‑1 (MQ=255)                                                                                                     gATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAAtt                                                <  1:874676/150‑1 (MQ=255)                                                                                                        atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAg                                             <  1:953881/150‑1 (MQ=255)                                                                                                        atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAg                                             <  2:225134/150‑1 (MQ=255)                                                                                                        atCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAg                                             <  2:266508/150‑1 (MQ=255)                                                                                                           ggCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTc                                          <  1:593232/150‑1 (MQ=255)                                                                                                           ggCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTc                                          <  1:592526/150‑1 (MQ=255)                                                                                                            gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGt                                                                              <  1:238833/113‑1 (MQ=255)                                                                                                            gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGt                                                                              >  2:238833/1‑113 (MQ=255)                                                                                                            gCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCg                                         >  1:1317984/1‑150 (MQ=255)                                                                                                              gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGt                                                                                                                     <  1:592474/72‑1 (MQ=255)                                                                                                              gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGt                                                                                                                     >  2:592474/1‑72 (MQ=255)                                                                                                              gACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGc                                       <  1:291877/150‑1 (MQ=255)                                                                                                                 aTTGAAACGCGGTGAGATAAAGTCGCGAATGCGGAAGCCCCGGGCCAGCCAGTCGGGGACGTCCGCGGACCTGGCGCCATACGCTTACAGGGCGGACATCGGGTCAGTGAGCCGTACGCTGACCCTGTGCAGGAAATTCAGGTCGGCCTg                                    >  2:172887/1‑150 (MQ=255)                                                                                                                    gAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCATCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTgggg                                 >  1:330599/1‑149 (MQ=255)                                                                                                                          gCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGAt                           <  2:465743/150‑1 (MQ=255)                                                                                                                            gTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTa                         >  1:1068255/1‑150 (MQ=255)                                                                                                                                  tAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                <  2:475001/89‑1 (MQ=255)                                                                                                                                  tAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCa                                                                                >  1:475001/1‑89 (MQ=255)                                                                                                                                         gcgAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCCGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGCAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAt            <  1:1358698/150‑1 (MQ=255)                                                                                                                                           gAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGa          <  2:1317984/150‑1 (MQ=255)                                                                                                                                              tGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctggacttcttcactgtcga       <  1:86924‑M2/150‑119 (MQ=255)                                                                                                                                                  gAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctg                        <  1:716677‑M2/129‑102 (MQ=255)                                                                                                                                                  gAAGGCCCGGGCCAGCCAGCCGGGGACGtccgcattcgcgactttatctcacgccgtttcaatgtcgccgatatccacggcttcactcgcggcgatccaatgcatgtgccagccgtcggtgagcgcctg                        >  2:716677‑M2/1‑28 (MQ=255)                                                                                                                                                   aaGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTcc  >  1:314996/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      TCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCCGAGGTCATGGCGCAGTAGGCTTGCAGGGCGGTCATCGGGTCAGTGAGCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCC  >  NC_002947/5555281‑5555576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.