New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5583099 =	47 (0.890)	6 (0.120)	6/240	NT	12.4%	coding (298/756 nt)	PP_4911	hypothetical protein
	?	NC_002947	5583142 =	39 (0.760)					coding (255/756 nt)	PP_4911	hypothetical protein

TGGTGATCCTGGCCAGCCGTCGCAGAGTGCGGGCATGGCCGTGGTACTCGGCCCTGTATCGGTGGCCGATTACCTTCAGCGTGAGACATTCCTGCAGCGTCAACCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5583250‑5583099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGG  >  NC_002947/5583142‑5583268                                                                                                                                                                                                                                                                                           TGGTGATCCTGGCCAGCCGTCGCAGAGTGCGGGCATGGCCGTGGTACTCGGCCCTGTATCGGTGGCCGATTACCTTCAGCGTGAGACATTCCTGCAGCGTCAACCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAG                                                                                                                                   >  1:1158634/1‑150  GGTGATCCTGGCCAGCCGTCGCAGAGTGCGGGCATGGCCGTGGTACTCGGCCCTGTATCGGTGGCCGATTACCTTCAGCGTGAGACATTCCTGCAGCGTCAACCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGC                                                                                                                                  <  2:853503/150‑1   GTGATCCTGGCCAGCCGTCGCAGAGTGCGGGCATGGCCGTGGTACTCGGCCCTGTATCGGTGGCCGATTACCTTCAGCGTGAGACATTCCTGCAGCGTCAACCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCC                                                                                                                                 >  2:289568/1‑150                                                                                                        CCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCACGCACTCTGCGACGGCTGGCCAG                            >  1:1304799/1‑150                                                                                                          TGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGG                                                          >  1:464316/1‑118                                                                                                          TGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGG                                                          <  2:464316/118‑1                                                                                                           GATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGAT                         >  1:615442/1‑150                                                                                                                 AGCCTGAGCGCGGCGACCGACGGTCGTTGGGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACC                     >  2:753188/1‑150                                                                                                                                  CGACGGTCGTTGGGCT‑‑GGCAGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGG  <  2:615442/150‑1                                                                                                                                                        GCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGA        >  1:32555/1‑124                                                                                                                                                        GCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGA        <  2:32555/124‑1                                                                                                                                                                                                                                                                                           TGGTGATCCTGGCCAGCCGTCGCAGAGTGCGGGCATGGCCGTGGTACTCGGCCCTGTATCGGTGGCCGATTACCTTCAGCGTGAGACATTCCTGCAGCGTCAACCTGATGGCAGCCTGAGCGCGGCGACCGACGGTCGTTGGGCT‑‑GGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5583250‑5583099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGG  >  NC_002947/5583142‑5583268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.