New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5583099 =	47 (0.890)	6 (0.120)	6/240	NT	12.4%	coding (298/756 nt)	PP_4911	hypothetical protein
	?	NC_002947	5583142 =	39 (0.760)					coding (255/756 nt)	PP_4911	hypothetical protein

ACGTCCGGGCTGAAGCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGCTGATGCATGG  >  NC_002947/5582996‑5583287                                                                                                                                                    |                                                                                                                                                  atcctggccagccgtcgcagagtgcgggcatggccgtggtactcggccctgtatcggtggccgattaccttcagcgtgagacattcctgcagcgtcaacctgatGGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATc                                                                                                                                                 >  1:615442‑M1/105‑150 (MQ=255)  cGTCCGGGCTGAAGCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAg                                                                                                                                               <  2:511097/150‑1 (MQ=255)  cGTCCGGGCTGAAGCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAg                                                                                                                                               <  1:245194/150‑1 (MQ=255)    ctggccagccgtcgcagagtgcgtgcatggccgtggtactcggccctgtatcggtggccgattaccttcagcgtgagacattcctgcagcgtcaacctgatGGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAgg                                                                                                                                              >  1:1304799‑M1/102‑150 (MQ=255)             aaGCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGc                                                                                                                                    >  1:432948/1‑150 (MQ=255)               gCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAg                                                                                                                                  <  1:402922/150‑1 (MQ=255)                         gCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCa                                                                                                                        >  1:627089/1‑150 (MQ=255)                                ccAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGaa                                                                                                                 <  2:738035/150‑1 (MQ=255)                                ccAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCCGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGaa                                                                                                                 <  1:9942/150‑1 (MQ=255)                                  ccgtggtactcggccctgtatcggtggccgattaccttcagcgtgagacattcctgcagcgtcaacctgatGGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCa                                                                                                                                                >  1:464316‑M1/72‑118 (MQ=255)                                  ccgtggtactcggccctgtatcggtggccgattaccttcagcgtgagacattcctgcagcgtcaacctgatGGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCa                                                                                                                                                <  2:464316‑M1/47‑1 (MQ=255)                                   gTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGt                                                                                                              >  1:934358/1‑150 (MQ=255)                                        acGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCg                                                                                                         <  1:584619/150‑1 (MQ=255)                                        acGCGTTGGCTGTACAGACGCCAGGCCAGTTGACGCACCAGCTCTTCGTCGGTCACC‑TTGAAATGGTGGCCAGCCCCACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCg                                                                                                         <  1:167700/150‑1 (MQ=255)                                           cgTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGcc                                                                                                      <  2:4926/150‑1 (MQ=255)                                                 cTGTACCGACGGCATGCCAGTTGACGCACCAGCAGCGGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCACTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACCCTGAAGGTAATCGGCCACCGAt                                                                                                <  2:325326/150‑1 (MQ=255)                                                       aGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAggg                                                                                          >  1:289568/1‑150 (MQ=255)                                                         aCGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGcc                                                                                        <  2:559878/150‑1 (MQ=255)                                                               ggccagTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTAc                                                                                  <  2:390648/150‑1 (MQ=255)                                                                    gTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACgg                                                                             >  1:518473/1‑150 (MQ=255)                                                                     ttGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCNGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGc                                                                            <  2:247618/150‑1 (MQ=255)                                                                          gCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGc                                                                       >  2:318008/1‑150 (MQ=255)                                                                          gCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCCCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGc                                                                       >  1:634576/1‑150 (MQ=255)                                                                              cagcagCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGc                                                                   >  2:1158634/1‑150 (MQ=255)                                                                                   gcTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTAc                                                                                  >  2:95890/1‑130 (MQ=255)                                                                                   gcTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTAc                                                                                  <  1:95890/130‑1 (MQ=255)                                                                                    cTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTg                                                             >  1:646722/1‑150 (MQ=255)                                                                                       gTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGa                                                          >  1:807677/1‑150 (MQ=255)                                                                                       gTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCAAGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGa                                                          >  2:870124/1‑150 (MQ=255)                                                                                           atatCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGc                                                      >  1:238025/1‑150 (MQ=255)                                                                                                   cctgatggcagcctgagcgcggcgaccgacggtcgttgggctggcagccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCACGCACTCTGCGACGGCTGGCCAg                                               >  1:1304799‑M2/50‑150 (MQ=255)                                                                                                     tgatggcagcctgagcgcggcgaccgacggtcgttgggctggcagccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACgg                                                                             >  1:464316‑M2/48‑118 (MQ=255)                                                                                                     tgatggcagcctgagcgcggcgaccgacggtcgttgggctggcagccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACgg                                                                             <  2:464316‑M2/71‑1 (MQ=255)                                                                                                      gatggcagcctgagcgcggcgaccgacggtcgttgggctggcagccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGAt                                            >  1:615442‑M2/47‑150 (MQ=255)                                                                                                         GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATcac                                         >  2:289568‑M1/1‑150 (MQ=255)                                                                                                          agcctgagcgcggcgaccgacggtcgttgggctcaggctgccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATcacc                                        >  2:753188‑M2/43‑150 (MQ=255)                                                                                                          GCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATcacc                                        <  2:853503‑M1/150‑1 (MQ=255)                                                                                                           CTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATcacca                                       >  1:1158634‑M1/1‑150 (MQ=255)                                                                                                              ccAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACt                                     >  1:476196/1‑149 (MQ=255)                                                                                                              ccAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACt                                     <  2:476196/149‑1 (MQ=255)                                                                                                                    cAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGc                                                            <  2:95166/120‑1 (MQ=255)                                                                                                                    cAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGc                                                            >  1:95166/1‑120 (MQ=255)                                                                                                                           cGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACa                       <  1:853503/150‑1 (MQ=255)                                                                                                                            gtcggtcgCCGCGCTCAGGCTGCCAACAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAg                      >  2:411945/1‑150 (MQ=255)                                                                                                                             tcggtcgCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAgg                     <  2:238025/150‑1 (MQ=255)                                                                                                                             tcggtcgCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAgg                     <  2:807677/150‑1 (MQ=255)                                                                                                                             tcggtcgCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAgg                     <  2:646722/150‑1 (MQ=255)                                                                                                                             cgacggtcgttgggctggcagccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAgg                     <  2:615442‑M2/127‑1 (MQ=255)                                                                                                                                    ccgcGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGAt                                            >  1:71096/1‑120 (MQ=255)                                                                                                                                    ccgcGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGAt                                            <  2:71096/120‑1 (MQ=255)                                                                                                                                    ccgcGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCg              >  1:605224/1‑150 (MQ=255)                                                                                                                                       cgcTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGCt           <  2:934358/150‑1 (MQ=255)                                                                                                                                          tCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGc            >  1:252746/1‑146 (MQ=255)                                                                                                                                          tCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGc            <  2:252746/146‑1 (MQ=255)                                                                                                                                                tGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATca                                          >  1:1203544/1‑110 (MQ=255)                                                                                                                                                tGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATca                                          <  2:1203544/110‑1 (MQ=255)                                                                                                                                                tGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGCTGATGCATgg  >  1:1347067/1‑150 (MQ=255)                                                                                                                                                 gccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGa                           >  1:32555‑M2/4‑124 (MQ=255)                                                                                                                                                 gccATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGa                           <  2:32555‑M2/121‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACGTCCGGGCTGAAGCCTGCGGTCGCCGGGGCCAGTACTACGCGTTGGCTGTCCAGACGCCAGGCCAGTTGACGCACCAGCAGCTGGTCGATATCCGATGAAA‑GGCTGCCAGCCCAACGACCGTCGGTCGCCGCGCTCAGGCTGCCATCAGGTTGACGCTGCAGGAATGTCTCACGCTGAAGGTAATCGGCCACCGATACAGGGCCGAGTACCACGGCCATGCCCGCACTCTGCGACGGCTGGCCAGGATCACCACTGTCGAGCTGATACAGGGCAACCGGCTGATGCATGG  >  NC_002947/5582996‑5583287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.