New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5680661	69 (1.310)	5 (0.100)	4/234	NT	6.8%	coding (665/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5680683	72 (1.440)					coding (687/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

CCGCTTATCAGCCATGAAAAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5680522‑5680661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgaCAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCACGCGCGGGCCAAGGCGTGCTGCGTGGAAGCCGGCGGCTTTGGCCTGCTCGACCTCGGCTTCGCTAAGGCCGCCTTCGGGGCCGATCACGAAGGCCAGGGTGGCGGGCTTTTCAT  <  NC_002947/5680683‑5680535                                                                                                                                                                                                                                                                                                   CCGCTTATCAGCCATGAAAAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCCTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGACAGCGCCACC                                                                                                                                             >  1:789896/1‑150          AGCCATGAAAAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGA                                                                                                                                                       >  1:1227225/1‑131          AGCCATGAAAAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGA                                                                                                                                                       <  2:1227225/131‑1                   AAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCCTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGACAGCGCCACCACCGGCGCGGTCTCGGTG                                                                                                                           <  2:789896/150‑1                      CCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGC                                                                                                                        <  2:858789/150‑1                                                                         GAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACC                                                                                                                                                         >  1:1241277/1‑66                                                                         GAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACC                                                                                                                                                         <  2:1241277/66‑1                                                                                            CCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGACAGCGCCACCACCGGCGCGGTCTCGGTG                                                                                                                           <  1:222337/77‑1                                                                                            CCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGACAGCGCCACCACCGGCGCGGTCTCGGTG                                                                                                                           >  2:222337/1‑77                                                                                                                                         CCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCACGCGCGGGCCAAGGCGTGCTGCGTGGAAGCCGGCGGCTTTGGCCTGCTCGACCTCGGCTTCGCTAAGGCCGCCTTCGGGGCCGATCACGAAGGCCAGGGTGGCGGGCTTTT     <  1:51494/150‑1                                                                                                                                            ACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCACGCGCGGGCCAAGGCGTGCTGCGTGGAAGCCGGCGGCTTTGGCCTGCTCGACCTCGGCTTCGCTAAGGCCGCCTTCGGGGCCGATCACGAAGGCCAGGGTGGCGGGCTTTTCAT  <  1:699994/150‑1                                                                                                                                                                                                                                                                                                   CCGCTTATCAGCCATGAAAAGCCCGCCACCCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5680522‑5680661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgaCAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCACGCGCGGGCCAAGGCGTGCTGCGTGGAAGCCGGCGGCTTTGGCCTGCTCGACCTCGGCTTCGCTAAGGCCGCCTTCGGGGCCGATCACGAAGGCCAGGGTGGCGGGCTTTTCAT  <  NC_002947/5680683‑5680535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.