| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5981456 = | 47 (0.890) | 13 (0.270) | 12/222 | NT | 22.2% | coding (2045/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| ? | NC_002947 | 5981491 = | 49 (1.030) | coding (2080/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase | |||||
CGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981609‑5981456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagggcga‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCG > NC_002947/5981491‑5981611 CGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGG < 1:21627/150‑1 GTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGG < 2:100079/150‑1 GTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGG < 1:62288/150‑1 ATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGC > 2:707261/1‑142 ATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGC < 1:707261/142‑1 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑TC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGA < 1:1363868/111‑1 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑TC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGA > 2:1363868/1‑111 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA > 1:269924/1‑91 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA < 2:269924/91‑1 CGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGC > 1:741199/1‑150 CCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGCGGTGTTGTTGGAGCTCGCCAGCCAGCTACAACACGCGAGCCCATGCAGGTTCGCAGCGGGTGACGTCGAAGGGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCAC > 1:1387147/1‑150 CCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCAC > 2:344001/1‑150 CCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACG < 1:344001/150‑1 CCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCC > 1:508343/1‑136 CCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCC < 2:508343/136‑1 CTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCC < 1:1277505/61‑1 CTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCC > 2:1277505/1‑61 TGGCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCG > 1:444081/1‑150 GCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTT < 1:744448/44‑1 GCCAAGCCTGGCGCATGGCCAGGGCGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTT > 2:744448/1‑44 CGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACACCGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGC > 1:321763/1‑119 CGA‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGC < 2:321763/119‑1 CGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981609‑5981456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagggcga‑AC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCG > NC_002947/5981491‑5981611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |