New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5981456 =	47 (0.890)	13 (0.270)	12/222	NT	22.2%	coding (2045/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5981491 =	49 (1.030)					coding (2080/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCGGGCACCTTCGA  >  NC_002947/5981344‑5981627                                                                                                                                                    |                                                                                                                                                gcTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATCAACGTATCGCACTCGCCATTCTCCTTGCTTGGCCAGGGCGAAcc                                                                                                                                               >  2:373801/1‑149 (MQ=255)     gCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑Cg                                                                                                                                    >  1:951447/1‑150 (MQ=255)         ccTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGgt                                                                                                                                <  2:782418/150‑1 (MQ=255)          cTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGgtg                                                                                                                               >  2:394740/1‑150 (MQ=255)          cTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGgtg                                                                                                                               <  1:551230/150‑1 (MQ=255)              aaCCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCCCGCTGCAGGCAGGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGtgttgt                                                                                                                           <  2:194958/150‑1 (MQ=255)               aCCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTgttgtt                                                                                                                          <  1:394740/150‑1 (MQ=255)                 gcaggaacgcttcgcagtcatccgctgcaaacccgcaggggctggcgcgttgtagctggctggcgagctcgaacaacacctcgctgcatgcacgtaTCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCg                                                                                                                        >  1:741199‑M1/97‑150 (MQ=255)                   ggCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAg                                                                                                                      <  1:1231303/150‑1 (MQ=255)                      cAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTc                                                                                                                   >  2:218707/1‑150 (MQ=255)                          aCGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCgcca                                                                                                               <  2:259601/150‑1 (MQ=255)                               ttGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTGACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGccagccag                                                                                                          <  2:1026468/150‑1 (MQ=255)                                    cTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACa                                                                                                     >  1:697620/1‑150 (MQ=255)                                     ttCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACaa                                                                                                    >  1:971452/1‑150 (MQ=255)                                     ttCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACaa                                                                                                    >  1:971474/1‑150 (MQ=255)                                       cACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAAcg                                                                                                  >  1:794052/1‑150 (MQ=255)                                              gACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAAcgc                                                                                                 >  2:308512/1‑144 (MQ=255)                                              gACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAAcgc                                                                                                 <  1:308512/144‑1 (MQ=255)                                                ccGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGccc                                                                                         >  1:626474/1‑150 (MQ=255)                                                 cGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGa                                                                                                                       >  1:1267109/1‑119 (MQ=255)                                                 cGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGa                                                                                                                       <  2:1267109/119‑1 (MQ=255)                                                   ggTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTg                                                                                      >  2:1099882/1‑150 (MQ=255)                                                      gATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGACAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                                   >  1:380662/1‑150 (MQ=255)                                                       aTGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCggg                                                                                  <  1:1099882/150‑1 (MQ=255)                                                         ccgcaggggctggcgcgttgtagctggctggcgagctcgaacaacacctcgtgcgttcgccctggccaagcctggcgcatggccagggcgaTC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGa                                                                                                                       >  2:1363868‑M2/92‑111 (MQ=255)                                                         ccgcaggggctggcgcgttgtagctggctggcgagctcgaacaacacctcgtgcgttcgccctggccaagcctggcgcatggccagggcgaTC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGa                                                                                                                       <  1:1363868‑M2/20‑1 (MQ=255)                                                          gAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGGTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGttt                                                                               >  1:1335359/1‑150 (MQ=255)                                                              ccGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAg                                                                           >  2:133344/1‑150 (MQ=255)                                                                gCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCg                                                                         >  1:248666/1‑150 (MQ=255)                                                                 cTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCgg                                                                        >  2:255543/1‑150 (MQ=255)                                                                  ttATGCACTCACGCCCTTGCACCAGCGCGCGTCGCTGGATGCACGTATCGCCCTGGGCATGCGCCAAGTTTGGCCAGGGCGAAC‑‑‑‑‑‑GGA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGTTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                                       <  2:17519/150‑1 (MQ=255)                                                                     tGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCGGCGGATGa                                                                    >  1:1192444/1‑150 (MQ=255)                                                                         cTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACtac                                                                <  2:951447/150‑3 (MQ=255)                                                                          tCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCg                                                               >  2:1233357/1‑150 (MQ=255)                                                                            aCGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGaa                                                             >  1:1104511/1‑150 (MQ=255)                                                                                ccGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGt                                                         >  1:778338/1‑150 (MQ=255)                                                                                  gTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTc                                                       <  1:132203/150‑1 (MQ=255)                                                                                    gCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCt                                                     <  2:248666/150‑1 (MQ=255)                                                                                          gcgcgcCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCt                                               >  2:664392/1‑150 (MQ=255)                                                                                             tcgaacaacacctcgtgcgaTCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                                   <  1:1363868‑M1/91‑1 (MQ=255)                                                                                             tcgaacaacacctcgtgcgaTCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                                   >  2:1363868‑M1/21‑111 (MQ=255)                                                                                             cgaacaacacctcgtgcgttcgccctggccaagcctggcgcatggccagggcgatACGTGCATGCAGCGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGc                                                   >  1:741199‑M2/56‑150 (MQ=255)                                                                                                    cTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGaa                                     <  2:925709/150‑1 (MQ=255)                                                                                                    cTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGaa                                     <  1:1120535/150‑1 (MQ=255)                                                                                                        atgcaCGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCg                                 >  2:251820/1‑150 (MQ=255)                                                                                                         tgcaCGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGc                                >  2:377633/1‑150 (MQ=255)                                                                                                            aCGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCGCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGACGcatg                             >  2:689260/1‑149 (MQ=255)                                                                                                             cGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGc                                                                <  2:193609/114‑1 (MQ=255)                                                                                                             cGTATCGCCCTGGCCATGCGCCAGGCGTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGc                                                                >  1:193609/1‑114 (MQ=255)                                                                                                                 TCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                                   <  2:269924‑M1/91‑1 (MQ=255)                                                                                                                 TCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                                   >  1:269924‑M1/1‑91 (MQ=255)                                                                                                                   GCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGcat                              >  2:707261‑M1/1‑142 (MQ=255)                                                                                                                   GCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGcat                              <  1:707261‑M1/142‑1 (MQ=255)                                                                                                                    ccctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGCGGTGTTGTTGGAGCTCGCCAGCCAGCTACAACACGCGAGCCCATGCAGGTTCGCAGCGGGTGACGTCGAAGGGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCac                     >  1:1387147‑M2/33‑150 (MQ=255)                                                                                                                    ccctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCac                     >  2:344001‑M2/33‑150 (MQ=255)                                                                                                                    CCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCac                     <  1:62288‑M1/150‑1 (MQ=255)                                                                                                                    CCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCac                     <  2:100079‑M1/150‑1 (MQ=255)                                                                                                                     cctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGcc                                  >  1:508343‑M2/32‑136 (MQ=255)                                                                                                                     cctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGcc                                  <  2:508343‑M2/105‑1 (MQ=255)                                                                                                                     cctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacg                    <  1:344001‑M2/119‑1 (MQ=255)                                                                                                                     CCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacg                    <  1:21627‑M1/150‑1 (MQ=255)                                                                                                                      ctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCgccagcc                                                                                                            >  2:1277505‑M2/31‑61 (MQ=255)                                                                                                                      ctggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCgccagcc                                                                                                            <  1:1277505‑M2/31‑1 (MQ=255)                                                                                                                       tggccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacgcg                  >  1:444081‑M2/30‑150 (MQ=255)                                                                                                                         gccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTgttgtt                                                                                                                          <  1:744448‑M2/17‑1 (MQ=255)                                                                                                                         gccaagcctggcgcatggccagggcgaAC‑‑‑‑‑‑GCA‑CGAGGTgttgtt                                                                                                                          >  2:744448‑M2/28‑44 (MQ=255)                                                                                                                             tGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCgg            <  1:377633/150‑1 (MQ=255)                                                                                                                             tGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCgg            <  2:21627/150‑1 (MQ=255)                                                                                                                              gcgcCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCGGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCGTGCGCACGCGACGCggg           <  2:1192444/150‑1 (MQ=255)                                                                                                                              gcgcCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCggg           >  1:519011/1‑150 (MQ=255)                                                                                                                              gcgcCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCggg           <  1:218707/150‑1 (MQ=255)                                                                                                                                 ccAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTGGGTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCGGGCAc        >  1:963826/1‑150 (MQ=255)                                                                                                                                  cAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCGGGCAcc       >  1:1060102/1‑150 (MQ=255)                                                                                                                                       ttGGCCAGGGCGAAC‑‑‑‑‑‑GTA‑TGTTGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCGGGCACCTTCGa  <  2:1327290/150‑1 (MQ=255)                                                                                                                                       ttGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGAACCGGGAACCTTCGa  <  2:380662/150‑1 (MQ=255)                                                                                                                                                 cgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACACCGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATgcgc                       >  1:321763‑M2/4‑119 (MQ=255)                                                                                                                                                 cgaAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATgcgc                       <  2:321763‑M2/116‑1 (MQ=255)                                                                                                                                                    aC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTg                                                                 >  1:1183315/1‑74 (MQ=255)                                                                                                                                                    aC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTg                                                                 <  2:1183315/74‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                GCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAAC‑‑‑‑‑‑GCA‑CGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCGGGCACCTTCGA  >  NC_002947/5981344‑5981627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.