New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983519	56 (1.070)	3 (0.060)	3/238	NT	4.9%	coding (4108/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983556	62 (1.220)					coding (4145/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
Rejected: Frequency below/above cutoff threshold.

CGACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983368‑5983519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAA  <  NC_002947/5983556‑5983411                                                                                                                                                                                                                                                                                                            CGACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACA                                                                                                                                                      >  1:517227/1‑150                                              CATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTT                                                                                                         <  2:951750/150‑1                                                                                                                      CCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAG                                                                                                              <  1:515230/73‑1                                                                                                                      CCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAG                                                                                                              >  2:515230/1‑73                                                                                                                                                     CAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAA  >  2:459517/1‑150                                                                                                                                                     CAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAA  >  2:565888/1‑150                                                                                                                                                     CAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAA  >  2:793109/1‑150                                                                                                                                                                                                                                                                                                            CGACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983368‑5983519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAA  <  NC_002947/5983556‑5983411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.