New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 264723	42 (0.800)	4 (0.080)	4/232	NT	10.1%	intergenic (+31/‑47)	gabD‑I/PP_mr03	succinate‑semialdehyde dehydrogenase/gabT regulatory region
	?	NC_002947	= 264742	32 (0.650)					intergenic (+50/‑28)	gabD‑I/PP_mr03	succinate‑semialdehyde dehydrogenase/gabT regulatory region

ATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCA  >  NC_002947/264576‑264872                                                                                                                                                    |                                                                                                                                                      aTCTCCAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCggg                                                                                                                                                     <  2:892436/150‑1 (MQ=255)     ccAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCGTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGgcgc                                                                                                                                                 <  1:197129/150‑1 (MQ=255)      cAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTTCCAGCGGGGcgcg                                                                                                                                                >  2:1029275/1‑150 (MQ=255)      cAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGcgcg                                                                                                                                                >  1:658653/1‑150 (MQ=255)      cAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGcgcg                                                                                                                                                >  2:424694/1‑150 (MQ=255)       aaCGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCggg                                                                                                                                                     <  2:1275779/144‑1 (MQ=255)       aaCGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCggg                                                                                                                                                     >  1:1275779/1‑144 (MQ=255)         cGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCgaga                                                                                                                                             <  2:799659/150‑1 (MQ=255)         cGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCgaga                                                                                                                                             <  2:658653/150‑1 (MQ=255)          gAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTGCCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGagag                                                                                                                                            <  1:455406/150‑1 (MQ=255)                        cGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctgg                                                                                                                              >  2:3835‑M2/1‑144 (MQ=255)                          gtggtATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGagacgtcgctctcgcgccccgctggca                                                                                                                            >  2:895221‑M1/1‑123 (MQ=255)                             gtATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGagacgtcgctctcgcgccccgctggcagag                                                                                                                         <  1:895221‑M1/150‑31 (MQ=255)                                tCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtttttt                                                                                                                      >  1:388432/1‑150 (MQ=255)                                 cAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGAc                                                                                                                                        >  2:1426599/1‑131 (MQ=255)                                 cAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGAc                                                                                                                                        <  1:1426599/131‑1 (MQ=255)                                 cAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTa                                                                                                                     >  1:1016974/1‑150 (MQ=255)                                              cagggaagcgAAGGTTCCAAGTCCGGTCTCGAGGACTACCTCAAAATCAAATACCTGTGCATCAGCGTGTGATAGCACGGTAAAGGCTTTACCTATGGCAGCTTTGCGCGTTATCGACGTTTCGCTGGCGTTTTTTACATCGCATTACCt                                                                                                        <  2:556060/143‑1 (MQ=255)                                               tGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTTCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCtg                                                                                                       <  1:1029275/150‑1 (MQ=255)                                                       gAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGc                                                                                                               >  1:451135/1‑134 (MQ=255)                                                       gAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGc                                                                                                               <  2:451135/134‑1 (MQ=255)                                                               cAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCa                                                                                       <  1:424694/150‑1 (MQ=255)                                                                 aGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtt                                                                                                                          >  1:1408474/1‑113 (MQ=255)                                                                 aGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtt                                                                                                                          <  2:1408474/113‑1 (MQ=255)                                                                       gTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTc                                                                               >  2:878966/1‑150 (MQ=255)                                                                            gAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCTAGGGCGTTCACGACAGTCGATCa                                                                          >  2:412305/1‑150 (MQ=255)                                                                            gAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCa                                                                          >  1:1268879/1‑150 (MQ=255)                                                                              ggACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAAc                                                                        <  1:1125822/150‑1 (MQ=255)                                                                               gACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGagacgtcgctctcgcgccccgctggcagaggtaaa                                                                                                                    <  1:66776‑M1/105‑36 (MQ=255)                                                                               gACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGagacgtcgctctcgcgccccgctggcagaggtaaa                                                                                                                    >  2:66776‑M1/1‑70 (MQ=255)                                                                                      tCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGc                                                                                                                                           <  2:1156972/75‑1 (MQ=255)                                                                                      tCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGc                                                                                                                                           >  1:1156972/1‑75 (MQ=255)                                                                                             cAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCTAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGa                                                         <  1:412305/150‑1 (MQ=255)                                                                                                        gCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAgc                                              <  2:815411/150‑1 (MQ=255)                                                                                                             aGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACa                                                                                                                   >  2:807624/1‑76 (MQ=255)                                                                                                             aGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACa                                                                                                                   <  1:807624/76‑1 (MQ=255)                                                                                                               gaacTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc                                       >  1:49729/4‑150 (MQ=255)                                                                                                               cGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc                                       >  2:1276958/1‑150 (MQ=255)                                                                                                                   ggATAGCACGGTAAAGGCTTTATCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTAGCCAGGGCGTCCACAACAGGCGATCAACGAATACTGTTTGCGATCACGCCCAGCCGCCCCCGAAt                                   >  2:455219/2‑150 (MQ=255)                                                                                                                         cACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAgc                             <  2:388432/150‑1 (MQ=255)                                                                                                                                  ggCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATa                                                                   <  2:4680/103‑1 (MQ=255)                                                                                                                                  ggCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATa                                                                   >  1:4680/1‑103 (MQ=255)                                                                                                                                  ggCCTTACCCCTCCCCGCGGGGCGCGCGCGTTCCGTCTCGCTGGCCTTTTTTATATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCt                    <  2:1016974/150‑1 (MQ=255)                                                                                                                                     tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtc                                                              <  1:66776‑M2/105‑71 (MQ=255)                                                                                                                                     tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtc                                                              >  2:66776‑M2/1‑35 (MQ=255)                                                                                                                                     tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACa                                                                                  <  1:1180570/85‑1 (MQ=255)                                                                                                                                     tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACa                                                                                  >  2:1180570/1‑85 (MQ=255)                                                                                                                                          ctctGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtcctcgataccgtacttggaaccttcgcggcccaggcccgaagccttgatac            <  1:895221‑M2/150‑121 (MQ=255)                                                                                                                                           tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGa                                                                                    >  1:731662/1‑77 (MQ=255)                                                                                                                                           tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGa                                                                                    <  2:731662/77‑1 (MQ=255)                                                                                                                                           tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc                                       >  1:301284/1‑122 (MQ=255)                                                                                                                                           tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc                                       <  2:301284/122‑1 (MQ=255)                                                                                                                                             tGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtcctcgataccgtacttggaaccttcgcggcccaggcccgaagccttgataccac         >  2:895221‑M2/1‑27 (MQ=255)                                                                                                                                             tGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAAt         <  2:1268879/150‑1 (MQ=255)                                                                                                                                               ccAGCGagacgtcgctctcgcgccccgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtcctcgataccgtacttggaaccttcgcggcccaggcccgaagccttgataccaccg       >  2:3835‑M1/1‑6 (MQ=255)                                                                                                                                                    ggggCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCa  <  1:236037/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCA  >  NC_002947/264576‑264872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.