| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 264723 | 42 (0.800) | 4 (0.080) | 4/232 | NT | 10.1% | intergenic (+31/‑47) | gabD‑I/PP_mr03 | succinate‑semialdehyde dehydrogenase/gabT regulatory region |
| ? | NC_002947 | = 264742 | 32 (0.650) | intergenic (+50/‑28) | gabD‑I/PP_mr03 | succinate‑semialdehyde dehydrogenase/gabT regulatory region | |||||
CGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCATTATGAGCAAAACCAAC > NC_002947/264599‑264889 | cGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctgg > 2:3835‑M2/1‑144 (MQ=255) tCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtttttt > 1:388432/1‑150 (MQ=255) cAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTa > 1:1016974/1‑150 (MQ=255) cagggaagcgAAGGTTCCAAGTCCGGTCTCGAGGACTACCTCAAAATCAAATACCTGTGCATCAGCGTGTGATAGCACGGTAAAGGCTTTACCTATGGCAGCTTTGCGCGTTATCGACGTTTCGCTGGCGTTTTTTACATCGCATTACCt < 2:556060/143‑1 (MQ=255) tGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTTCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCtg < 1:1029275/150‑1 (MQ=255) gAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGc > 1:451135/1‑134 (MQ=255) gAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGc < 2:451135/134‑1 (MQ=255) cAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCa < 1:424694/150‑1 (MQ=255) aGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtt > 1:1408474/1‑113 (MQ=255) aGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCtt < 2:1408474/113‑1 (MQ=255) gTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTc > 2:878966/1‑150 (MQ=255) gAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCTAGGGCGTTCACGACAGTCGATCa > 2:412305/1‑150 (MQ=255) gAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCa > 1:1268879/1‑150 (MQ=255) ggACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAAc < 1:1125822/150‑1 (MQ=255) cAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCTAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGa < 1:412305/150‑1 (MQ=255) gCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAgc < 2:815411/150‑1 (MQ=255) aGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACa > 2:807624/1‑76 (MQ=255) aGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACa < 1:807624/76‑1 (MQ=255) gaacTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc > 1:49729/4‑150 (MQ=255) cGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc > 2:1276958/1‑150 (MQ=255) ggATAGCACGGTAAAGGCTTTATCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTAGCCAGGGCGTCCACAACAGGCGATCAACGAATACTGTTTGCGATCACGCCCAGCCGCCCCCGAAt > 2:455219/2‑150 (MQ=255) cACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAgc < 2:388432/150‑1 (MQ=255) ggCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATa > 1:4680/1‑103 (MQ=255) ggCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATa < 2:4680/103‑1 (MQ=255) ggCCTTACCCCTCCCCGCGGGGCGCGCGCGTTCCGTCTCGCTGGCCTTTTTTATATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCt < 2:1016974/150‑1 (MQ=255) tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtc < 1:66776‑M2/105‑71 (MQ=255) tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtc > 2:66776‑M2/1‑35 (MQ=255) tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACa > 2:1180570/1‑85 (MQ=255) tttACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACa < 1:1180570/85‑1 (MQ=255) ctctGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtcctcgataccgtacttggaaccttcgcggcccaggcccgaagccttgatac < 1:895221‑M2/150‑121 (MQ=255) tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGa > 1:731662/1‑77 (MQ=255) tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGa < 2:731662/77‑1 (MQ=255) tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc < 2:301284/122‑1 (MQ=255) tctGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGccccc > 1:301284/1‑122 (MQ=255) tGCCAGCGGGGCGCGAGAGCGACGTCTcgctggcagaggtaaagcctttaccgtgctatcagacgctgatgcacaggtatttgatttcgaggtagtcctcgataccgtacttggaaccttcgcggcccaggcccgaagccttgataccac > 2:895221‑M2/1‑27 (MQ=255) tGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAAt < 2:1268879/150‑1 (MQ=255) ggggCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCa < 1:236037/150‑1 (MQ=255) gcgAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAg < 2:648205/141‑1 (MQ=255) gcgAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAg > 1:648205/1‑141 (MQ=255) gTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGt > 1:1344281/1‑118 (MQ=255) gTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGt < 2:1344281/118‑1 (MQ=255) tctcGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCATTATGAGCAAAACCAAc > 1:465342/1‑150 (MQ=255) | CGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTGGCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCATTATGAGCAAAACCAAC > NC_002947/264599‑264889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |