New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 535046 | 43 (0.820) | 9 (0.190) | 5/226 | NT | 18.3% | intergenic (+28/‑92) | nusG/rplK | transcription antipausing factor NusG/50S ribosomal protein L11 |
? | NC_002947 | = 535053 | 41 (0.850) | intergenic (+35/‑85) | nusG/rplK | transcription antipausing factor NusG/50S ribosomal protein L11 |
TAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGC > NC_002947/534910‑535190 | tAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTgctgcg > 2:1036776‑M2/1‑144 (MQ=255) gtgtCGAAGAAGTTAACTACGAAAAGAGTCGCCTGGCGCTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTCCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg < 1:784766‑M1/150‑16 (MQ=255) agaagTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTgt < 1:1095246/150‑1 (MQ=255) gaagTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTgtc < 1:440777/150‑1 (MQ=255) cTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg < 2:98690/150‑1 (MQ=255) aaaaGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATaa > 1:75245/1‑150 (MQ=255) agTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGc > 2:1007063/1‑150 (MQ=255) gCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGt < 2:362487/150‑1 (MQ=255) ccTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCt > 2:228371/1‑107 (MQ=255) ccTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCt < 1:228371/107‑1 (MQ=255) cAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATcc < 1:1179169/150‑1 (MQ=255) tGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGtt > 1:44968/1‑108 (MQ=255) tGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGtt < 2:44968/108‑1 (MQ=255) tCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCaa < 2:613660/130‑1 (MQ=255) tCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCaa > 1:613660/1‑130 (MQ=255) aTTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGGTAAAACGCAAGTCATCCGGGGAGCCATCAGGc > 1:583523/1‑150 (MQ=255) aTTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGc < 2:1255636/150‑1 (MQ=255) tCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTc < 1:1270474/150‑1 (MQ=255) gTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTa > 1:444986/1‑150 (MQ=255) gTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTa > 2:1131881/1‑150 (MQ=255) tctACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGa > 1:701855/1‑150 (MQ=255) tctACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGa > 1:765190/1‑150 (MQ=255) tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg < 1:1232494/150‑1 (MQ=255) tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg < 2:765190/150‑1 (MQ=255) tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg > 2:566835/1‑150 (MQ=255) cTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg > 1:795288‑M1/1‑58 (MQ=255) cTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg < 2:795288‑M1/73‑16 (MQ=255) gAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggtgt < 2:847292‑M1/72‑18 (MQ=255) gAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggtgt > 1:847292‑M1/1‑55 (MQ=255) gTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGa < 1:60225/137‑1 (MQ=255) gTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGa > 2:60225/1‑137 (MQ=255) cAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg < 2:346957‑M1/65‑16 (MQ=255) cAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg > 1:346957‑M1/1‑50 (MQ=255) aGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaaga < 1:566835/150‑1 (MQ=255) gCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg > 2:576680‑M1/1‑48 (MQ=255) gCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCacacagggctgcggg < 1:576680‑M1/63‑16 (MQ=255) cAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAagaaga < 2:75245/150‑1 (MQ=255) cGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAg < 1:1363130/150‑1 (MQ=255) gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAgg > 1:584525/1‑150 (MQ=255) gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAgg < 1:1131881/150‑1 (MQ=255) gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTAAgg > 2:247571/1‑150 (MQ=255) tCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATg > 2:315752/1‑127 (MQ=255) tCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATg < 1:315752/127‑1 (MQ=255) tAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCa > 1:218007/1‑150 (MQ=255) gCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg > 2:1260378/1‑59 (MQ=255) gCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg < 1:1260378/59‑1 (MQ=255) cGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCaa < 2:444986/150‑1 (MQ=255) cGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCaa < 1:199288/150‑1 (MQ=255) aaGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaa > 1:800378/1‑120 (MQ=255) aaGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaa < 2:800378/120‑1 (MQ=255) aGCATCCCATACCCCGCAGCCCTGAGTAAATCTTGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGtt > 1:749307/1‑150 (MQ=255) cATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTaa > 1:920587/1‑150 (MQ=255) cATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTaa < 1:803227/150‑1 (MQ=255) ccATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAggcc > 2:942899/1‑150 (MQ=255) acaccgcaGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactc > 1:847292‑M2/4‑17 (MQ=255) acacCGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactc < 2:847292‑M2/72‑56 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctggactcgagctccaccggagtagagcgaccgaaaatgagcaccgcaagcgccaggcgactcttttcgtagttaacttcttcgacac < 1:784766‑M2/150‑136 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactcgag > 1:795288‑M2/1‑15 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactcgag < 2:795288‑M2/73‑59 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctg < 2:346957‑M2/65‑51 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctg > 1:346957‑M2/1‑15 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggc > 2:576680‑M2/1‑15 (MQ=255) cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggc < 1:576680‑M2/63‑49 (MQ=255) cGCAGCacacagggctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactcgagctccaccggagtagagcgaccgaaaatgagcaccgcaacctgcaggcgactcttttcgtagttaacttcttcgacacta > 2:1036776‑M1/1‑6 (MQ=255) cGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCggccaggc < 1:1007063/150‑1 (MQ=255) | TAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGC > NC_002947/534910‑535190 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |