New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 535046	43 (0.820)	9 (0.190)	5/226	NT	18.3%	intergenic (+28/‑92)	nusG/rplK	transcription antipausing factor NusG/50S ribosomal protein L11
	?	NC_002947	= 535053	41 (0.850)					intergenic (+35/‑85)	nusG/rplK	transcription antipausing factor NusG/50S ribosomal protein L11

TAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCA  >  NC_002947/534910‑535197                                                                                                                                                |                                                                                                                                                 tAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTgctgcg                                                                                                                                            >  2:1036776‑M2/1‑144 (MQ=255)          agaagTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTgt                                                                                                                                   <  1:1095246/150‑1 (MQ=255)           gaagTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTgtc                                                                                                                                  <  1:440777/150‑1 (MQ=255)                   cTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg                                                                                                                          <  2:98690/150‑1 (MQ=255)                        aaaaGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATaa                                                                                                                     >  1:75245/1‑150 (MQ=255)                             agTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGc                                                                                                                >  2:1007063/1‑150 (MQ=255)                                 gCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGt                                                                                                            <  2:362487/150‑1 (MQ=255)                                      cAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATcc                                                                                                       <  1:1179169/150‑1 (MQ=255)                                                tGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGtt                                                                                                                                       <  2:44968/108‑1 (MQ=255)                                                tGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGtt                                                                                                                                       >  1:44968/1‑108 (MQ=255)                                                   tCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCaa                                                                                                              <  2:613660/130‑1 (MQ=255)                                                   tCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCaa                                                                                                              >  1:613660/1‑130 (MQ=255)                                                     aTTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGGTAAAACGCAAGTCATCCGGGGAGCCATCAGGc                                                                                        >  1:583523/1‑150 (MQ=255)                                                     aTTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGc                                                                                        <  2:1255636/150‑1 (MQ=255)                                                         tCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTc                                                                                    <  1:1270474/150‑1 (MQ=255)                                                            gTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTa                                                                                 >  2:1131881/1‑150 (MQ=255)                                                            gTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTa                                                                                 >  1:444986/1‑150 (MQ=255)                                                                 tctACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGa                                                                            >  1:701855/1‑150 (MQ=255)                                                                 tctACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGa                                                                            >  1:765190/1‑150 (MQ=255)                                                                      tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg                                                                       >  2:566835/1‑150 (MQ=255)                                                                      tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg                                                                       <  1:1232494/150‑1 (MQ=255)                                                                      tCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTg                                                                       <  2:765190/150‑1 (MQ=255)                                                                                     gTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGa                                                                     <  1:60225/137‑1 (MQ=255)                                                                                     gTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGa                                                                     >  2:60225/1‑137 (MQ=255)                                                                                         aGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaaga                                                    <  1:566835/150‑1 (MQ=255)                                                                                            cAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAagaaga                                                 <  2:75245/150‑1 (MQ=255)                                                                                                 cGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAg                                            <  1:1363130/150‑1 (MQ=255)                                                                                                  gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAgg                                           >  1:584525/1‑150 (MQ=255)                                                                                                  gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAgg                                           <  1:1131881/150‑1 (MQ=255)                                                                                                  gAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTAAgg                                           >  2:247571/1‑150 (MQ=255)                                                                                                         tCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATg                                                           >  2:315752/1‑127 (MQ=255)                                                                                                         tCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATg                                                           <  1:315752/127‑1 (MQ=255)                                                                                                           tAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCa                                  >  1:218007/1‑150 (MQ=255)                                                                                                              gCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg                                                                                                                          <  1:1260378/59‑1 (MQ=255)                                                                                                              gCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTgg                                                                                                                          >  2:1260378/1‑59 (MQ=255)                                                                                                                   cGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCaa                          <  1:199288/150‑1 (MQ=255)                                                                                                                   cGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCaa                          <  2:444986/150‑1 (MQ=255)                                                                                                                     aaGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaa                                                      >  1:800378/1‑120 (MQ=255)                                                                                                                     aaGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTaa                                                      <  2:800378/120‑1 (MQ=255)                                                                                                                      aGCATCCCATACCCCGCAGCCCTGAGTAAATCTTGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGtt                       >  1:749307/1‑150 (MQ=255)                                                                                                                        cATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTaa                     <  1:803227/150‑1 (MQ=255)                                                                                                                        cATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTaa                     >  1:920587/1‑150 (MQ=255)                                                                                                                            ccATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAggcc                 >  2:942899/1‑150 (MQ=255)                                                                                                                                acaccgcaGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactc                                                                                           >  1:847292‑M2/4‑17 (MQ=255)                                                                                                                                acacCGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactc                                                                                           <  2:847292‑M2/72‑56 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctggactcgagctccaccggagtagagcgaccgaaaatgagcaccgcaagcgccaggcgactcttttcgtagttaacttcttcgacac           <  1:784766‑M2/150‑136 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactcgag                                                                                        >  1:795288‑M2/1‑15 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctgaactcgag                                                                                        <  2:795288‑M2/73‑59 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctg                                                                                                <  2:346957‑M2/65‑51 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggctg                                                                                                >  1:346957‑M2/1‑15 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggc                                                                                                  >  2:576680‑M2/1‑15 (MQ=255)                                                                                                                                  cccGCAGCCCTGTGTgctgcggggtatgggatgcttcgtccgcctagaccttttcgacctggc                                                                                                  <  1:576680‑M2/63‑49 (MQ=255)                                                                                                                                    cGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCggccaggc         <  1:1007063/150‑1 (MQ=255)                                                                                                                                           cTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCa  >  1:378301/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                 TAGTGTCGAAGAAGTTAACTACGAAAAGAGTCGCCTGCAGGTTGCGGTGCTCATTTTCGGTCGCTCTACTCCGGTGGAGCTCGAGTTCAGCCAGGTCGAAAAGGTCTAGGCGGACGAAGCATCCCATACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCA  >  NC_002947/534910‑535197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.