New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	861555 =	46 (0.880)	3 (0.060)	3/238	NT	6.3%	coding (210/987 nt)	PP_0742	hypothetical protein
	?	NC_002947	861590 =	45 (0.890)					coding (175/987 nt)	PP_0742	hypothetical protein

GTCCTTGAGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCTGCAA  >  NC_002947/861408‑861704                                                                                                                                                    |                                                                                                                                                      ccggcatcgccggtttgtcagccgcccaggccttgcagaaggccgggcaatccgtgcacttgttcgacaaaggccacggcagtggcgggcgcatggccagcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTg                                                                                                                                                     >  1:1399527‑M1/148‑150 (MQ=255)  tCCTTGAGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGACCCCCATtgctgc                                                                                                                                                    >  2:1223575/1‑150 (MQ=255)    cTTGAGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCAc                                                                                                                                                  <  2:900472/150‑1 (MQ=255)    cTTGAGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCAc                                                                                                                                                  >  2:856335/1‑150 (MQ=255)        aGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGa                                                                                                                                              <  1:587053/150‑1 (MQ=255)             gCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATcgac                                                                                                                                         <  1:1034958/150‑1 (MQ=255)                  gggTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAAGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGaa                                                                                                                                      >  1:928281/1‑148 (MQ=255)                  gggTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAAGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGaa                                                                                                                                      <  2:928281/148‑1 (MQ=255)                      aaTGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCg                                                                                                                                >  2:1324158/1‑150 (MQ=255)                       aTGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCgg                                                                                                                               <  1:576859/150‑1 (MQ=255)                         cccaggccttgcagaaggccgggcaatccgtgcacttgttcgacaaaggccacggcagtggcgggcgcatggccagcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTGc                                                                                                                                                    >  1:1262849‑M1/124‑127 (MQ=255)                         cccaggccttgcagaaggccgggcaatccgtgcacttgttcgacaaaggccacggcagtggcgggcgcatggccagcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTGc                                                                                                                                                    <  2:1262849‑M1/4‑1 (MQ=255)                                aTGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCa                                                                                                                      <  1:573081/150‑1 (MQ=255)                                     agaaggccgggcaatccgtgcacttgttcgacaaaggccacggcagtggcgggcgcatggccagcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGaa                                                                                                                 >  2:410890‑M1/112‑150 (MQ=255)                                         aCGCCCAGCCAGCGAGTCTGCTCGTCGGGGGAGGGCGTAAGTTCTCCATCCCGGTAGATGTACAGTTGCGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGAGAAGAGCAGTGAAGTAc                                                                                                             >  2:117639/1‑150 (MQ=255)                                             ccacccaGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGaa                                                                                                                                      <  1:955980/121‑1 (MQ=255)                                             ccacccaGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGaa                                                                                                                                      >  2:955980/1‑121 (MQ=255)                                               acccaGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTgcg                                                                                                       >  1:1099352/1‑150 (MQ=255)                                                         tCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGa                                                                                             >  1:161912/1‑150 (MQ=255)                                                         tCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGa                                                                                             <  1:601071/150‑1 (MQ=255)                                                           tGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAgc                                                                                           <  1:1324158/150‑1 (MQ=255)                                                            gCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAgcg                                                                                          >  2:30643/1‑150 (MQ=255)                                                                gtcgGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGcc                                                                                      >  1:207265/1‑150 (MQ=255)                                                                         gggTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTAGCt                                                                             <  1:432056/150‑1 (MQ=255)                                                                            tgtAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCATGTCGAGCGCGCCGGCTTCGCTgcg                                                                          <  1:117639/150‑1 (MQ=255)                                                                             gtAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCAAGCCGGCGGCCACCTATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTgcgc                                                                         >  1:516371/1‑150 (MQ=255)                                                                                aGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTg                                                                      >  2:987556/1‑150 (MQ=255)                                                                                        aTCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACtgt                                                                                                          <  1:1102361/106‑1 (MQ=255)                                                                                        aTCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACtgt                                                                                                          >  2:1102361/1‑106 (MQ=255)                                                                                             ggTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGGCGGGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGcgcc                                                         <  2:884463/150‑1 (MQ=255)                                                                                                  ttGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCa                                                    >  1:929837/1‑150 (MQ=255)                                                                                                    gcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTGCACCTGATCGACGAAGCGTCGGTCACGGGCa                                                                                                                      <  1:1296583‑M1/34‑1 (MQ=255)                                                                                                    gcaagcgcagcgaagccggcgcgctcgacctgggcgcacagtacttcaCTGCACCTGATCGACGAAGCGTCGGTCACGGGCa                                                                                                                      >  2:1296583‑M1/49‑82 (MQ=255)                                                                                                    gTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACt                                                  >  1:852453/1‑150 (MQ=255)                                                                                                    gTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGAAGACGCGTCGGTCACGGGCAGTGAAGGACTGTGCGCCCAGGTCTGTCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACt                                                  >  2:871404/1‑150 (MQ=255)                                                                                                     tACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCtt                                                                       <  1:197510/128‑1 (MQ=255)                                                                                                     tACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCtt                                                                       >  2:197510/1‑128 (MQ=255)                                                                                                          ttGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTg                                            >  2:423576/1‑150 (MQ=255)                                                                                                           tGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTgg                                           <  2:1099352/150‑1 (MQ=255)                                                                                                               gTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTTTAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCtt                                       >  1:320183/1‑150 (MQ=255)                                                                                                                    cACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCg                                  >  2:1275584/1‑150 (MQ=255)                                                                                                                    cACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCg                                  >  1:649935/1‑150 (MQ=255)                                                                                                                     aCTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGa                                 >  2:973652/1‑150 (MQ=255)                                                                                                                       tGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAAc                               <  1:423576/150‑1 (MQ=255)                                                                                                                          tCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAg                            >  1:1127920/1‑150 (MQ=255)                                                                                                                               ccAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTTCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGTCCTTTGTCGAACAAGTGCAc                       >  1:1148652/1‑150 (MQ=255)                                                                                                                                cAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAGGTGCACg                      >  1:736625/1‑150 (MQ=255)                                                                                                                                cAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACg                      >  1:102577/1‑150 (MQ=255)                                                                                                                                   ccGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGAt                   <  2:852453/150‑1 (MQ=255)                                                                                                                                      gcggcCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGc                <  1:987556/150‑1 (MQ=255)                                                                                                                                           caaccATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGc           >  2:1064422/4‑150 (MQ=255)                                                                                                                                           cACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGc           <  2:207265/150‑1 (MQ=255)                                                                                                                                            aCCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGcc          <  2:1127920/150‑1 (MQ=255)                                                                                                                                                aTTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCt      >  2:1026596/1‑150 (MQ=255)                                                                                                                                                aTTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCt      <  1:973652/150‑1 (MQ=255)                                                                                                                                                    CTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCTGc    >  1:1370670‑M1/1‑148 (MQ=255)                                                                                                                                                    CTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCTGc    <  2:1370670‑M1/148‑1 (MQ=255)                                                                                                                                                    CTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGACATGCGCCCGCCACTGCCGTGGCTTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCTTCaa  <  2:515783‑M1/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GTCCTTGAGCAAGCCGCGGGTAATGGCGCTCATGCGTGGCACGCCCACCCAGCGCGTCTGCTCGTCGGGGGAGGGTGTAAGTTCGCCATCACGGTAGTTGTACAGTTGGGGTTTCCACTGCTCGGCCCAGCCGGCGGCCACCCATTGCTGCACCTGATCGACGAAGCGTCGGTCACGGGCAGTGAAGTACTGTGCGCCCAGGTCGAGCGCGCCGGCTTCGCTGCGCTTGCTGGCCATGCGCCCGCCACTGCCGTGGCCTTTGTCGAACAAGTGCACGGATTGCCCGGCCTTCTGCAA  >  NC_002947/861408‑861704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.