New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1518118 =	52 (0.990)	3 (0.060)	3/236	NT	5.8%	coding (1266/1491 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
	?	NC_002947	1518189 =	48 (0.950)					coding (1337/1491 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase

GCTCACGGCAAGCTGTTGTGCCTGTTCGGCTGCGGCGGTGACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGAT  >  NC_002947/1517969‑1518264                                                                                                                                                      |                                                                                                                                                   gCTCACGGCAAGCTGTTGTGCCTGTTCGGCTGCGGCGATACTGGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCTGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTc                                                                                                                                                    <  1:14342/150‑1 (MQ=255)                 tgtgCCTGTTCGGCTGCGGCGGTGACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCg                                                                                                                                    <  2:638248/150‑1 (MQ=255)                                  ggcggTGACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTgac                                                                                                                   <  1:472784/150‑1 (MQ=255)                                        gACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACTCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTgac                                                                                                                   <  2:1237532/144‑1 (MQ=255)                                        gACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGAGTACTGAAGATCCGTCACTCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTgac                                                                                                                   >  1:1237532/1‑144 (MQ=255)                                          ccGTGATCGCGGAAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGa                                                                                                           <  1:1001587/150‑1 (MQ=255)                                             tGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGtt                                                                                                        <  2:506324/150‑1 (MQ=255)                                                    ggCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCCCACATCTGCGACGACATGCGCGCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCgcc                                                                                                 >  2:1106583/1‑150 (MQ=255)                                                      cAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCATGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCgccgg                                                                                               <  2:656802/150‑1 (MQ=255)                                                        aGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCgccggcc                                                                                             >  2:1348514/1‑150 (MQ=255)                                                         gcgcCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCgccggccg                                                                                            >  2:685362/1‑150 (MQ=255)                                                            cccGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTgg                                                                                         >  2:1235017/1‑150 (MQ=255)                                                             ccGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGa                                                                                                                                               <  2:1045395/95‑1 (MQ=255)                                                             ccGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGa                                                                                                                                               >  1:1045395/1‑95 (MQ=255)                                                                cTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGaa                                                                                     <  1:252752/150‑1 (MQ=255)                                                                cTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGaa                                                                                     <  1:252828/150‑1 (MQ=255)                                                                         gatctcctggtaatcctcgtgccccttgccggccagcacgatcacatcgttggcagcagcggtggcaatcaggtgcgCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATcgcg                                                                            >  1:845549‑M1/78‑150 (MQ=255)                                                                                         tGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCg                                                            >  1:666625/1‑150 (MQ=255)                                                                                             tGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCgctgc                                                        >  1:767205/1‑150 (MQ=255)                                                                                                ccGCGTACCGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTc                                                                                                             >  2:871844/1‑94 (MQ=255)                                                                                                ccGCGTACCGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTc                                                                                                             <  1:871844/94‑1 (MQ=255)                                                                                                       cTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCACCGAt                                              <  2:767205/150‑1 (MQ=255)                                                                                                        tGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCAc                                                              >  2:723674/1‑133 (MQ=255)                                                                                                        tGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCAc                                                              <  1:723674/133‑1 (MQ=255)                                                                                                          gTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATcg                                                                              <  1:1108320/115‑1 (MQ=255)                                                                                                          gTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATcg                                                                              >  2:1108320/1‑115 (MQ=255)                                                                                                          gTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGAtgtg                                           >  2:56308/1‑150 (MQ=255)                                                                                                           ttACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGaa                                                                                     >  2:1273755/1‑107 (MQ=255)                                                                                                           ttACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGaa                                                                                     <  1:1273755/107‑1 (MQ=255)                                                                                                             aCCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCAAATGATGGCCACCGCTGCTGCCAACGATGTGATc                                        <  1:1106583/150‑1 (MQ=255)                                                                                                               cgacgaCAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGt                                      >  2:704572/1‑150 (MQ=255)                                                                                                                  cgacAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCt                                   <  1:1042999/150‑1 (MQ=255)                                                                                                                    acAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTCCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTgg                                 >  1:894551/1‑150 (MQ=255)                                                                                                                      aaCCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGcc                               >  2:567216/1‑150 (MQ=255)                                                                                                                      aaCCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGcc                               >  1:910667/1‑150 (MQ=255)                                                                                                                         ccGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTg                                                                                          <  1:195446/88‑1 (MQ=255)                                                                                                                         ccGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTg                                                                                          >  2:195446/1‑88 (MQ=255)                                                                                                                         ccGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGc                            >  2:1323037/1‑150 (MQ=255)                                                                                                                             gTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAgg                        <  1:1348514/150‑1 (MQ=255)                                                                                                                               agcagcggtggcaatcaggtgcgCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATc                                                                               <  2:333601‑M1/70‑1 (MQ=255)                                                                                                                               agcagcggtggcaatcaggtgcgCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATc                                                                               >  1:333601‑M1/24‑93 (MQ=255)                                                                                                                               aCTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAgggg                      <  2:711196/150‑1 (MQ=255)                                                                                                                                cTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGc                     >  1:232756/1‑150 (MQ=255)                                                                                                                                 tGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGACGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCa                    >  1:20156/1‑150 (MQ=255)                                                                                                                                  gAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCAc                   >  2:1327230/1‑150 (MQ=255)                                                                                                                                    aGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGa                 <  1:567216/150‑1 (MQ=255)                                                                                                                                      aTCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAgg               <  1:1327230/150‑1 (MQ=255)                                                                                                                                      aTCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAgg               <  1:170298/150‑1 (MQ=255)                                                                                                                                        ccGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGAt             <  2:232756/150‑1 (MQ=255)                                                                                                                                          gTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGGCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTa           >  2:541495/1‑150 (MQ=255)                                                                                                                                           tCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTAc          <  2:894551/150‑1 (MQ=255)                                                                                                                                             aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGa                                               >  2:910927/1‑111 (MQ=255)                                                                                                                                             aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGa                                               <  1:910927/111‑1 (MQ=255)                                                                                                                                             aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATc                                        >  2:650043/1‑118 (MQ=255)                                                                                                                                             aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATc                                        <  1:650043/118‑1 (MQ=255)                                                                                                                                             aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCa        <  1:704572/150‑1 (MQ=255)                                                                                                                                                   cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCaa                                                  >  1:283597/1‑102 (MQ=255)                                                                                                                                                   cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCaa                                                  <  2:283597/102‑1 (MQ=255)                                                                                                                                                   cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGAt  <  1:685362/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCTCACGGCAAGCTGTTGTGCCTGTTCGGCTGCGGCGGTGACCGTGATCGCGGCAAGCGCCCGCTGATGGCCGAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGAT  >  NC_002947/1517969‑1518264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.