New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1518118 =52 (0.990)3 (0.060) 3/236 NT 5.8% coding (1266/1491 nt) murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
?NC_002947 1518189 = 48 (0.950)coding (1337/1491 nt) murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase

GAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTGGGAGGCTC  >  NC_002947/1518041‑1518332
                                                                                                                                                    |                                                                                                                                                 
gatctcctggtaatcctcgtgccccttgccggccagcacgatcacatcgttggcagcagcggtggcaatcaggtgcgCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATcgcg                                                                                                                                                  >  1:845549‑M1/78‑150 (MQ=255)
                tGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCg                                                                                                                                  >  1:666625/1‑150 (MQ=255)
                    tGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCgctgc                                                                                                                             >  1:767205/1‑150 (MQ=255)
                              cTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCACCGAt                                                                                                                  <  2:767205/150‑1 (MQ=255)
                               tGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCAc                                                                                                                                    <  1:723674/133‑1 (MQ=255)
                               tGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCAc                                                                                                                                    >  2:723674/1‑133 (MQ=255)
                                 gTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGAtgtg                                                                                                               >  2:56308/1‑150 (MQ=255)
                                    aCCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCAAATGATGGCCACCGCTGCTGCCAACGATGTGATc                                                                                                            <  1:1106583/150‑1 (MQ=255)
                                      cgacgaCAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGt                                                                                                          >  2:704572/1‑150 (MQ=255)
                                         cgacAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCt                                                                                                       <  1:1042999/150‑1 (MQ=255)
                                           acAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTCCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTgg                                                                                                     >  1:894551/1‑150 (MQ=255)
                                             aaCCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGcc                                                                                                   >  2:567216/1‑150 (MQ=255)
                                             aaCCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGcc                                                                                                   >  1:910667/1‑150 (MQ=255)
                                                ccGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGc                                                                                                >  2:1323037/1‑150 (MQ=255)
                                                    gTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAgg                                                                                            <  1:1348514/150‑1 (MQ=255)
                                                      aCTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAgggg                                                                                          <  2:711196/150‑1 (MQ=255)
                                                       cTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGc                                                                                         >  1:232756/1‑150 (MQ=255)
                                                        tGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGACGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCa                                                                                        >  1:20156/1‑150 (MQ=255)
                                                         gAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCAc                                                                                       >  2:1327230/1‑150 (MQ=255)
                                                           aGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGa                                                                                     <  1:567216/150‑1 (MQ=255)
                                                             aTCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAgg                                                                                   <  1:170298/150‑1 (MQ=255)
                                                             aTCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAgg                                                                                   <  1:1327230/150‑1 (MQ=255)
                                                               ccGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGAt                                                                                 <  2:232756/150‑1 (MQ=255)
                                                                 gTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGGCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTa                                                                               >  2:541495/1‑150 (MQ=255)
                                                                  tCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTAc                                                                              <  2:894551/150‑1 (MQ=255)
                                                                    aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGa                                                                                                                    <  1:910927/111‑1 (MQ=255)
                                                                    aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGa                                                                                                                    >  2:910927/1‑111 (MQ=255)
                                                                    aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATc                                                                                                            >  2:650043/1‑118 (MQ=255)
                                                                    aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATc                                                                                                            <  1:650043/118‑1 (MQ=255)
                                                                    aCGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCa                                                                            <  1:704572/150‑1 (MQ=255)
                                                                          cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCaa                                                                                                                       <  2:283597/102‑1 (MQ=255)
                                                                          cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCaa                                                                                                                       >  1:283597/1‑102 (MQ=255)
                                                                          cTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGAt                                                                      <  1:685362/150‑1 (MQ=255)
                                                                           cgcgatggcttcgccacggccggcgacgaactcgacgtcgtcaggcctggtgaaaccggggcgaatgtcatcgCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATc                                                                     >  1:845549‑M2/74‑150 (MQ=255)
                                                                              gatggcttcgccacggccggcgacgaactcgacgtcgtcaggcctggtgaaaccggggcgaatgtcatcgCGCACCTGATTGCCACCgctgct                                                                                                                            >  1:333601‑M2/71‑93 (MQ=255)
                                                                              gatggcttcgccacggccggcgacgaactcgacgtcgtcaggcctggtgaaaccggggcgaatgtcatcgCGCACCTGATTGCCACCgctgct                                                                                                                            <  2:333601‑M2/23‑1 (MQ=255)
                                                                               ATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATg                                                                 >  2:910667‑M1/1‑150 (MQ=255)
                                                                               ATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATg                                                                 <  2:578017‑M1/150‑1 (MQ=255)
                                                                                 GACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACAAGGAGATCAATGGc                                                               >  2:20156‑M1/1‑150 (MQ=255)
                                                                                          cccGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCAt                                                      >  1:1225851/1‑150 (MQ=255)
                                                                                          cccGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCAt                                                      >  1:702414/1‑150 (MQ=255)
                                                                                                  cACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTtctc                                              <  1:56308/150‑1 (MQ=255)
                                                                                                    ccAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGAt                                                                                                                  >  2:542659/1‑80 (MQ=255)
                                                                                                    ccAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGAt                                                                                                                  <  1:542659/80‑1 (MQ=255)
                                                                                                    ccAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCg                                            >  1:1004628/1‑150 (MQ=255)
                                                                                                     cAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTccca                                           <  2:723998/150‑3 (MQ=255)
                                                                                                           tGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGAc                                     >  2:22230/1‑150 (MQ=255)
                                                                                                            gacgacGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGAcc                                    >  2:64196/1‑150 (MQ=255)
                                                                                                             acgacgTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAGTAGCGAGCGCCATGAGGTCTCCGATTTGACCg                                   >  2:373396/1‑150 (MQ=255)
                                                                                                                  gTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCCTGTAATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGcc                              <  1:373396/150‑1 (MQ=255)
                                                                                                                   tCGAGTTCGTCGCCGCCCGTGGCCAAGCCATCGCGCCCGTGATTGCCACCGCTGCTGCCAACGTTGTGATCGTGCTGGCCGGCAAGGGGAACGAGGATTACAAGGAGATCAAATGCCAGCGCACTGATTTTTACGATTTGACAGAAACCg                             >  2:278017/1‑150 (MQ=255)
                                                                                                                                  gccgTGGCGAAGCCATCGCGCACCTGATTGCACCGACTGCGCGGGCGAGGGTGAGGGTGCTGGCCGGCAATGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGCCTTGACCGAAGCCGAAAAGGCACTTGCAg              <  2:666625/150‑1 (MQ=255)
                                                                                                                                      tGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTg          <  2:1004628/150‑1 (MQ=255)
                                                                                                                                         cGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAgg                                                                          <  2:771219/83‑1 (MQ=255)
                                                                                                                                         cGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAgg                                                                          >  1:771219/1‑83 (MQ=255)
                                                                                                                                          gAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTGGGAg      >  2:1388043/1‑150 (MQ=255)
                                                                                                                                            aGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTgg         <  1:628190/145‑1 (MQ=255)
                                                                                                                                            aGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTgg         >  2:628190/1‑145 (MQ=255)
                                                                                                                                              ccATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTGGGAGGCTc  <  1:1323037/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
GAAGTGGCCGAGCGCCTGGCTGACCGCGTACTGGTTACCGACGACAACCCGCGTACTGAAGATCCGTCACGCATCTTCGATGACATTCGCCCCGGTTTCACCAGGCCTGACGACGTCGAGTTCGTCGCCGGCCGTGGCGAAGCCATCGCGCACCTGATTGCCACCGCTGCTGCCAACGATGTGATCGTGCTGGCCGGCAAGGGGCACGAGGATTACCAGGAGATCAATGGCGAGCGCCATGATTTCTCCGATTTGACCGAAGCCGAAAAGGCACTTGCAGCCTGGGAGGCTC  >  NC_002947/1518041‑1518332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.