| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1930420 = | 22 (0.420) | 9 (0.210) | 7/204 | NT | 38.9% | intergenic (‑45/+60) | PP_1729/apeB | hypothetical protein/M18 family aminopeptidase |
| ? | NC_002947 | 1930478 = | 10 (0.230) | intergenic (‑103/+2) | PP_1729/apeB | hypothetical protein/M18 family aminopeptidase | |||||
TGAAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGA > NC_002947/1930273‑1930566 | tGAAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTaa > 2:1179743/1‑150 (MQ=255)cgccagccacctgggtgtgcggacggtggatatcggtttgccgacctttgccatgcactccattcgcgagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTaa > 2:204723‑M1/148‑150 (MQ=255)cgccagccacctgggtgtgcgcacggtggatatcggtttgccgacctttgccatgcactccattcgcgagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTaa < 1:153662‑M1/3‑1 (MQ=255) tGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGcgcg < 2:991463/150‑1 (MQ=255) aggaacaCCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAAc < 1:384394/150‑1 (MQ=255) gaacaCCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGACGCCTCGAAcag < 1:55818/150‑3 (MQ=255) gtttgcctacctttgccatgcactccattcgcgagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACcgccgc > 1:1021847‑M1/113‑150 (MQ=255) acCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACcgccgc > 2:1122374/1‑150 (MQ=255) acCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACcgccgc < 1:1122374/150‑1 (MQ=255) cgacctttgccatgcactccattcgcgagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAg > 1:1354909‑M1/107‑150 (MQ=255) cgacctttgccatgcactccattcgcgagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAg > 2:153662‑M1/107‑150 (MQ=255) cAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGAAGCAGGGTCCTGAAACTAGCTTAGCTCTTGACCAAAAAGTCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCcgc < 1:1386821/150‑1 (MQ=255) aTGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa > 1:1383333/1‑123 (MQ=255) aTGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa < 2:1383333/123‑1 (MQ=255) aTGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc < 2:65565/133‑1 (MQ=255) aTGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc > 1:65565/1‑133 (MQ=255) gagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACTGCCGCGAACa > 1:194355‑M1/81‑123 (MQ=255) gagctgtgtggcagccatgacctggcgcacctggtgaaggtactgaccgcgttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACa < 2:194355‑M1/43‑1 (MQ=255) aCAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCaa > 2:746354/1‑142 (MQ=255) aCAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCaa < 1:746354/142‑1 (MQ=255) aTCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa < 1:1053677/113‑1 (MQ=255) aTCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa > 2:1053677/1‑113 (MQ=255) aGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGAACTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAAc > 2:162576/1‑150 (MQ=255) tAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc < 1:394751/101‑1 (MQ=255) tAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc > 2:394751/1‑101 (MQ=255) tAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTAAGTACCTTCACCAgg > 1:787813/1‑150 (MQ=255) tactgaccgcgttctaccgtagccgcgagctgccttgatgTaa > 2:1130032‑M1/41‑43 (MQ=255) tactgaccgcgttctaccgtagccgcgagctgccttgatgTaa < 1:1130032‑M1/3‑1 (MQ=255) cTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTgcgc > 2:481458/1‑150 (MQ=255) aCCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc < 2:225824/83‑1 (MQ=255) aCCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCgcgc > 1:225824/1‑83 (MQ=255) ttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa > 1:937635‑M1/30‑70 (MQ=255) ttctaccgtagccgcgagctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGaa < 2:937635‑M1/41‑1 (MQ=255) ccTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGGGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAAGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCAACAGGTGCGCCAGGTCATGGCTGGCGCACGGcg > 2:371594/1‑149 (MQ=255) agctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAg < 2:1249169‑M1/44‑1 (MQ=255) agctgccttgatgTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAg > 1:1249169‑M1/14‑57 (MQ=255) gTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGa < 1:481458/150‑1 (MQ=255) | TGAAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGA > NC_002947/1930273‑1930566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |