New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 250840743 (0.820)5 (0.100) 5/234 NT 10.4% coding (323/438 nt) PP_2202 membrane protein
?NC_002947 = 2508421 45 (0.900)coding (309/438 nt) PP_2202 membrane protein

CAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGG  >  NC_002947/2508260‑2508553
                                                                                                                                                   |                                                                                                                                                  
cAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTGACGCATTATCCCGGCGAcc                                                                                                                                                  >  1:433689‑M1/1‑148 (MQ=255)
   gCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGc                                                                                                                                               <  2:1059932/150‑1 (MQ=255)
   gCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGc                                                                                                                                               >  1:417263/1‑150 (MQ=255)
           ccACGCGAAACCTGAAAGGTGTTATCTGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCgg                                                                                                                                       <  1:1070764/150‑1 (MQ=255)
                cgAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgc                                                                                                                                  >  2:1346484‑M2/1‑146 (MQ=255)
                 gAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgcc                                                                                                                                 >  1:853968‑M2/1‑145 (MQ=255)
                  aaaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccg                                                                                                                                <  1:1366347‑M1/150‑21 (MQ=255)
                  aaaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgccg                                                                                                                                >  1:815621‑M2/1‑144 (MQ=255)
                   aaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccgg                                                                                                                               <  1:1379317‑M1/150‑22 (MQ=255)
                      cTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCa                                                                                                                            >  2:1385052/1‑150 (MQ=255)
                       tGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCAc                                                                                                                           >  1:852957/1‑150 (MQ=255)
                         aaaGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                         >  2:172807/1‑150 (MQ=255)
                                 tACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAg                                                                                                                 <  2:982270/150‑1 (MQ=255)
                                    cAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCAGTTTCCCGGGGATTAGGGGGAGCGGGTCTGCGATCAGCGGCATCCAGCTg                                                                                                              >  2:784800/1‑150 (MQ=255)
                                       gCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGACCCGCTTACGCTGAtcgccgggataatgcgtgagccattct                                                                                                           >  2:433689‑M2/1‑123 (MQ=255)
                                         gTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGAGGCCAGACTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTAACGCAATATCCCGGCGATCAGCGTAAGAGGGTCGCCGATCACCGGCATCCAGCTGagcag                                                                                                         >  2:214537/1‑150 (MQ=255)
                                           gAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGagcagca                                                                                                       >  1:202376/1‑150 (MQ=255)
                                              aCCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCg                                                                                                    >  1:1192096/1‑150 (MQ=255)
                                                cAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGCGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGAc                                                                                                  <  2:257042/150‑1 (MQ=255)
                                                              catcGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCCCCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCg                                                                                    <  2:17741/150‑1 (MQ=255)
                                                                 cGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTg                                                                                 <  1:16561/150‑1 (MQ=255)
                                                                    aaGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTa                                                                              <  2:1192096/150‑1 (MQ=255)
                                                                       cACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAgcg                                                                           >  1:663838/1‑150 (MQ=255)
                                                                           gCATAGAGGCCAGCATTGGCCAGGGTCAGCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCgctgc                                                                       >  2:1236027/1‑150 (MQ=255)
                                                                              tAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCtgctgc                                                                    <  1:819999/150‑1 (MQ=255)
                                                                                    ccAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGAAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCAcgc                                                              <  1:172807/150‑1 (MQ=255)
                                                                                          ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt                                                                                              >  1:624080/1‑112 (MQ=255)
                                                                                          ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt                                                                                              <  2:624080/112‑1 (MQ=255)
                                                                                              ccAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTggg                                                    <  2:417263/150‑1 (MQ=255)
                                                                                                      aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                         >  2:965084/1‑73 (MQ=255)
                                                                                                      aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                         <  1:965084/73‑1 (MQ=255)
                                                                                                        cAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaa                                          >  1:67120/1‑150 (MQ=255)
                                                                                                         aGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaaa                                         <  2:906840/150‑1 (MQ=255)
                                                                                                           cAACAGGCCGCGCCAGAATGTCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg                                       <  2:397256/150‑1 (MQ=255)
                                                                                                           cAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg                                       >  2:1253034/1‑150 (MQ=255)
                                                                                                             aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccggga                                                                                                                             <  2:1122871‑M1/62‑24 (MQ=255)
                                                                                                             aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccggga                                                                                                                             >  1:1122871‑M1/1‑39 (MQ=255)
                                                                                                             aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt                                                                                                               >  2:382977/1‑76 (MQ=255)
                                                                                                             aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt                                                                                                               <  1:382977/76‑1 (MQ=255)
                                                                                                              cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGTCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGaa                                    <  2:924284/150‑1 (MQ=255)
                                                                                                              cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                     <  2:599095/149‑1 (MQ=255)
                                                                                                              cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                     >  1:599095/1‑149 (MQ=255)
                                                                                                                   aGCGCCGGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAgc                               >  2:290703/1‑150 (MQ=255)
                                                                                                                         aGAATGGCTCACGCATTATCCCGGCGAtcagcgtaagcgggtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgc                         >  2:433689‑M1/1‑27 (MQ=255)
                                                                                                                                 tCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTAAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAgg                 >  2:1345427/1‑150 (MQ=255)
                                                                                                                                   aCGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTg               >  1:908929/1‑150 (MQ=255)
                                                                                                                                     gCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCt             >  2:852769/1‑150 (MQ=255)
                                                                                                                                       aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                     >  2:793544/1‑124 (MQ=255)
                                                                                                                                       aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                     <  1:793544/124‑1 (MQ=255)
                                                                                                                                        ttATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGa          <  1:1236027/150‑1 (MQ=255)
                                                                                                                                          aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg        <  1:1064715/150‑1 (MQ=255)
                                                                                                                                          aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg        <  2:663838/150‑1 (MQ=255)
                                                                                                                                           tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt                                                                                               <  2:1122871‑M2/62‑40 (MQ=255)
                                                                                                                                           tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt                                                                                               >  1:1122871‑M2/1‑23 (MQ=255)
                                                                                                                                             ccGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtt     <  1:1379317‑M2/150‑130 (MQ=255)
                                                                                                                                             ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                   <  2:817545/120‑1 (MQ=255)
                                                                                                                                             ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                   >  1:817545/1‑120 (MQ=255)
                                                                                                                                             ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATggcc     >  1:937482/1‑150 (MQ=255)
                                                                                                                                              cGGCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggttt    >  1:815621‑M1/1‑6 (MQ=255)
                                                                                                                                              cGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggttt    <  1:1366347‑M2/150‑131 (MQ=255)
                                                                                                                                               ggCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtttc   >  1:853968‑M1/1‑5 (MQ=255)
                                                                                                                                                gCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtttcg  >  2:1346484‑M1/1‑4 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGG  >  NC_002947/2508260‑2508553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.