New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2508407 | 43 (0.820) | 5 (0.100) | 5/234 | NT | 10.4% | coding (323/438 nt) | PP_2202 | membrane protein |
? | NC_002947 | = 2508421 | 45 (0.900) | coding (309/438 nt) | PP_2202 | membrane protein |
CAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGG > NC_002947/2508260‑2508553 | cAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTGACGCATTATCCCGGCGAcc > 1:433689‑M1/1‑148 (MQ=255) gCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGc < 2:1059932/150‑1 (MQ=255) gCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGc > 1:417263/1‑150 (MQ=255) ccACGCGAAACCTGAAAGGTGTTATCTGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCgg < 1:1070764/150‑1 (MQ=255) cgAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgc > 2:1346484‑M2/1‑146 (MQ=255) gAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgcc > 1:853968‑M2/1‑145 (MQ=255) aaaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccg < 1:1366347‑M1/150‑21 (MQ=255) aaaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgccg > 1:815621‑M2/1‑144 (MQ=255) aaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccgg < 1:1379317‑M1/150‑22 (MQ=255) cTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCa > 2:1385052/1‑150 (MQ=255) tGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCAc > 1:852957/1‑150 (MQ=255) aaaGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg > 2:172807/1‑150 (MQ=255) tACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAg < 2:982270/150‑1 (MQ=255) cAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCAGTTTCCCGGGGATTAGGGGGAGCGGGTCTGCGATCAGCGGCATCCAGCTg > 2:784800/1‑150 (MQ=255) gCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGACCCGCTTACGCTGAtcgccgggataatgcgtgagccattct > 2:433689‑M2/1‑123 (MQ=255) gTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGAGGCCAGACTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTAACGCAATATCCCGGCGATCAGCGTAAGAGGGTCGCCGATCACCGGCATCCAGCTGagcag > 2:214537/1‑150 (MQ=255) gAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGagcagca > 1:202376/1‑150 (MQ=255) aCCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCg > 1:1192096/1‑150 (MQ=255) cAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGCGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGAc < 2:257042/150‑1 (MQ=255) catcGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCCCCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCg < 2:17741/150‑1 (MQ=255) cGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTg < 1:16561/150‑1 (MQ=255) aaGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTa < 2:1192096/150‑1 (MQ=255) cACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAgcg > 1:663838/1‑150 (MQ=255) gCATAGAGGCCAGCATTGGCCAGGGTCAGCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCgctgc > 2:1236027/1‑150 (MQ=255) tAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCtgctgc < 1:819999/150‑1 (MQ=255) ccAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGAAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCAcgc < 1:172807/150‑1 (MQ=255) ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt > 1:624080/1‑112 (MQ=255) ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt < 2:624080/112‑1 (MQ=255) ccAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTggg < 2:417263/150‑1 (MQ=255) aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg > 2:965084/1‑73 (MQ=255) aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg < 1:965084/73‑1 (MQ=255) cAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaa > 1:67120/1‑150 (MQ=255) aGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaaa < 2:906840/150‑1 (MQ=255) cAACAGGCCGCGCCAGAATGTCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg < 2:397256/150‑1 (MQ=255) cAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg > 2:1253034/1‑150 (MQ=255) aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccggga < 2:1122871‑M1/62‑24 (MQ=255) aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGAcccgcttacgctgatcgccggga > 1:1122871‑M1/1‑39 (MQ=255) aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt > 2:382977/1‑76 (MQ=255) aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt < 1:382977/76‑1 (MQ=255) cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGTCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGaa < 2:924284/150‑1 (MQ=255) cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa < 2:599095/149‑1 (MQ=255) cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa > 1:599095/1‑149 (MQ=255) aGCGCCGGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAgc > 2:290703/1‑150 (MQ=255) aGAATGGCTCACGCATTATCCCGGCGAtcagcgtaagcgggtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgc > 2:433689‑M1/1‑27 (MQ=255) tCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTAAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAgg > 2:1345427/1‑150 (MQ=255) aCGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTg > 1:908929/1‑150 (MQ=255) gCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCt > 2:852769/1‑150 (MQ=255) aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa > 2:793544/1‑124 (MQ=255) aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa < 1:793544/124‑1 (MQ=255) ttATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGa < 1:1236027/150‑1 (MQ=255) aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg < 1:1064715/150‑1 (MQ=255) aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg < 2:663838/150‑1 (MQ=255) tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt < 2:1122871‑M2/62‑40 (MQ=255) tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt > 1:1122871‑M2/1‑23 (MQ=255) ccGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtt < 1:1379317‑M2/150‑130 (MQ=255) ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc < 2:817545/120‑1 (MQ=255) ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc > 1:817545/1‑120 (MQ=255) ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATggcc > 1:937482/1‑150 (MQ=255) cGGCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggttt > 1:815621‑M1/1‑6 (MQ=255) cGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggttt < 1:1366347‑M2/150‑131 (MQ=255) ggCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtttc > 1:853968‑M1/1‑5 (MQ=255) gCGAcccgcttacgctgatcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtttcg > 2:1346484‑M1/1‑4 (MQ=255) | CAGGCAGTGGACCACGCGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGG > NC_002947/2508260‑2508553 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |