New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2508407	43 (0.820)	5 (0.100)	5/234	NT	10.4%	coding (323/438 nt)	PP_2202	membrane protein
	?	NC_002947	= 2508421	45 (0.900)					coding (309/438 nt)	PP_2202	membrane protein

CGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGGCCCAGCAGCCAGTTGA  >  NC_002947/2508276‑2508569                                                                                                                                                  |                                                                                                                                                     cgAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgc                                                                                                                                                  >  2:1346484‑M2/1‑146 (MQ=255)  gAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgcc                                                                                                                                                 >  1:853968‑M2/1‑145 (MQ=255)   aaaCCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGtcgccg                                                                                                                                                >  1:815621‑M2/1‑144 (MQ=255)       cTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCa                                                                                                                                            >  2:1385052/1‑150 (MQ=255)        tGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCAc                                                                                                                                           >  1:852957/1‑150 (MQ=255)          aaaGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                                         >  2:172807/1‑150 (MQ=255)                  tACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAg                                                                                                                                 <  2:982270/150‑1 (MQ=255)                     cAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCAGTTTCCCGGGGATTAGGGGGAGCGGGTCTGCGATCAGCGGCATCCAGCTg                                                                                                                              >  2:784800/1‑150 (MQ=255)                        gCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGACCCGCTTACGCTGAtcgccgggataatgcgtgagccattct                                                                                                                           >  2:433689‑M2/1‑123 (MQ=255)                          gTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGAGGCCAGACTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTAACGCAATATCCCGGCGATCAGCGTAAGAGGGTCGCCGATCACCGGCATCCAGCTGagcag                                                                                                                         >  2:214537/1‑150 (MQ=255)                            gAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGagcagca                                                                                                                       >  1:202376/1‑150 (MQ=255)                               aCCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCg                                                                                                                    >  1:1192096/1‑150 (MQ=255)                                 cAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGCGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGAc                                                                                                                  <  2:257042/150‑1 (MQ=255)                                               catcGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCCCCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCg                                                                                                    <  2:17741/150‑1 (MQ=255)                                                  cGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTg                                                                                                 <  1:16561/150‑1 (MQ=255)                                                     aaGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTa                                                                                              <  2:1192096/150‑1 (MQ=255)                                                        cACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAgcg                                                                                           >  1:663838/1‑150 (MQ=255)                                                            gCATAGAGGCCAGCATTGGCCAGGGTCAGCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCgctgc                                                                                       >  2:1236027/1‑150 (MQ=255)                                                               tAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCtgctgc                                                                                    <  1:819999/150‑1 (MQ=255)                                                                     ccAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGAAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCAcgc                                                                              <  1:172807/150‑1 (MQ=255)                                                                           ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt                                                                                                              <  2:624080/112‑1 (MQ=255)                                                                           ttGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCAtt                                                                                                              >  1:624080/1‑112 (MQ=255)                                                                               ccAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTggg                                                                    <  2:417263/150‑1 (MQ=255)                                                                                       aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                                         >  2:965084/1‑73 (MQ=255)                                                                                       aCCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCg                                                                                                                                         <  1:965084/73‑1 (MQ=255)                                                                                         cAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaa                                                          >  1:67120/1‑150 (MQ=255)                                                                                          aGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGaaa                                                         <  2:906840/150‑1 (MQ=255)                                                                                            cAACAGGCCGCGCCAGAATGTCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg                                                       <  2:397256/150‑1 (MQ=255)                                                                                            cAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAgg                                                       >  2:1253034/1‑150 (MQ=255)                                                                                              aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt                                                                                                                               <  1:382977/76‑1 (MQ=255)                                                                                              aCAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCt                                                                                                                               >  2:382977/1‑76 (MQ=255)                                                                                               cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGTCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGaa                                                    <  2:924284/150‑1 (MQ=255)                                                                                               cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                                     <  2:599095/149‑1 (MQ=255)                                                                                               cAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                                     >  1:599095/1‑149 (MQ=255)                                                                                                    aGCGCCGGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAgc                                               >  2:290703/1‑150 (MQ=255)                                                                                                                  tCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTAAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAgg                                 >  2:1345427/1‑150 (MQ=255)                                                                                                                    aCGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTg                               >  1:908929/1‑150 (MQ=255)                                                                                                                      gCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCt                             >  2:852769/1‑150 (MQ=255)                                                                                                                        aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                                     >  2:793544/1‑124 (MQ=255)                                                                                                                        aTTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGa                                                     <  1:793544/124‑1 (MQ=255)                                                                                                                         ttATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGa                          <  1:1236027/150‑1 (MQ=255)                                                                                                                           aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg                        <  2:663838/150‑1 (MQ=255)                                                                                                                           aTCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATg                        <  1:1064715/150‑1 (MQ=255)                                                                                                                            tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt                                                                                                               <  2:1122871‑M2/62‑40 (MQ=255)                                                                                                                            tCCCGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgt                                                                                                               >  1:1122871‑M2/1‑23 (MQ=255)                                                                                                                              ccGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtt                     <  1:1379317‑M2/150‑130 (MQ=255)                                                                                                                              ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                                   >  1:817545/1‑120 (MQ=255)                                                                                                                              ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                                   <  2:817545/120‑1 (MQ=255)                                                                                                                              ccGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATggcc                     >  1:937482/1‑150 (MQ=255)                                                                                                                               cGGCGATCAGCGTAAGCGGGtcgccgggataatgcgtgagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggttt                    <  1:1366347‑M2/150‑131 (MQ=255)                                                                                                                                     tCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCGCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGaa                                                    >  2:921782/1‑112 (MQ=255)                                                                                                                                     tCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGaa                                                    <  1:921782/112‑1 (MQ=255)                                                                                                                                      cAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGGCCcag             >  1:511986/1‑150 (MQ=255)                                                                                                                                       aGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                                   <  2:1215795/111‑1 (MQ=255)                                                                                                                                       aGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAAc                                                   >  1:1215795/1‑111 (MQ=255)                                                                                                                                               cGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCGTTTCCCAGGGCCTCCAGCTGTTGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGGCCCAGCAGCCAGtt    <  1:1385052/150‑1 (MQ=255)                                                                                                                                               cGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGGCCCAGCAGCCAGtt    <  1:290703/150‑1 (MQ=255)                                                                                                                                                 ggtcgccgggataatgcgtcagccattctggcgcttcctgttgctggtgaccctggccaaggctggccgctatgcggtgcttgcgatgattaccctgggctggtttcacgcctggtaacacctttcaggtttcgcgtggtccactgcctg  >  1:433689‑M2/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CGAAACCTGAAAGGTGTTACCAGGCGTGAAACCAGCCCAGGGTAATCATCGCAAGCACCGCATAGCGGCCAGCCTTGGCCAGGGTCACCAGCAACAGGAAGCGCCAGAATGGCTCACGCATTATCCCGGCGATCAGCGTAAGCGGGTCGCCGATCACCGGCATCCAGCTGAGCAGCAGCGACCATTGCCCCCAGCGTTGGTAGCGCTGCTGCGCACGCGCCAGTTGGGCAGCGCTGAAAGGGAACCAGCGCTTGTCGCGCAGGTGCTCGATGGCCCGGCCCAGCAGCCAGTTGA  >  NC_002947/2508276‑2508569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.