New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2696924 =	46 (0.880)	3 (0.060)	3/232	NT	6.9%	coding (782/972 nt)	PP_2363	hypothetical protein
	?	NC_002947	2697012 =	37 (0.750)					coding (870/972 nt)	PP_2363	hypothetical protein

TTCGGCACGGTGAGCCAGGGCATAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGC  >  NC_002947/2696776‑2697071                                                                                                                                                     |                                                                                                                                                    ttCGGCACGGTGAGCCAGGGCATAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGt                                                                                                                                                    <  1:243111/150‑1 (MQ=255)  ccgtcgcgacaggcggcggctgcttcgggggtattgaccgccgttcagaactgcacatccagtatcacactgtcggtgtagttcgcagcccgcggtgccgcctgatcggtatagaccttgtcgatataattgaacacctggctacccGTg                                                                                                                                                   <  2:622139‑M1/3‑1 (MQ=255)     gCACGGTGAGCCAGGGCATAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCg                                                                                                                                                >  1:1147378/1‑150 (MQ=255)     gCACGGTGAGCCAGGGCATAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCg                                                                                                                                                <  1:239734/150‑1 (MQ=255)         gacaggcggcggctgcttcgggggtattgaccgccgttcagaactgcacatccagtatcacactgtcggtgtagttcgcagccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGc                                                                                                                                                  >  1:490723‑M1/141‑144 (MQ=255)         gacaggcggcggctgcttcgggggtattgaccgccgttcagaactgcacatccagtatcacactgtcggtgtagttcgcagccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGc                                                                                                                                                  <  2:490723‑M1/4‑1 (MQ=255)                     cATAAACGTGTCATGCACCAAGGGCAGCTGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTgggg                                                                                                                                <  2:1397992/150‑1 (MQ=255)                      aTAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTggggg                                                                                                                               >  2:1329342/1‑150 (MQ=255)                       tAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGACGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTgggggg                                                                                                                              >  1:1179045/1‑150 (MQ=255)                           cGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTc                                                                                                                          >  1:134815/1‑150 (MQ=255)                                 acgCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGc                                                                                                                    >  1:1098926/3‑150 (MQ=255)                                      ccAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCa                                                                                                               <  2:776887/150‑1 (MQ=255)                                                  gcTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTa                                                                                                   <  2:1187443/150‑1 (MQ=255)                                                   cTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGACGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTAc                                                                                                  <  2:1179045/150‑1 (MQ=255)                                                          gTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTgg                                                                                                                                  <  1:304235/111‑1 (MQ=255)                                                          gTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTgg                                                                                                                                  >  2:304235/1‑111 (MQ=255)                                                            aGGGCTGGGTGACGGGCCCACAGGTTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACCACTCCCTGGCCTATGCCATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGa                                                                                         <  1:434405/150‑1 (MQ=255)                                                            aGGGCTGGGTGACGGGATCCCCGTTTCCGGTGGGCGGCGGCGGCTGAAGTCTTCGGCCAAAAGCGACCTGGTCTACGACATTTTCAAATGTGCCGGCACCGTGCGCTGGCGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGa                                                                                         <  1:434043/150‑1 (MQ=255)                                                                       aCGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCg                                                                              <  2:134815/150‑1 (MQ=255)                                                                         gggCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGc                                                                            >  2:121410/1‑150 (MQ=255)                                                                             gtgtagttcgcagccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAg                                                                        <  2:363021‑M1/78‑1 (MQ=255)                                                                                aCGTGTCCGGTGGGCGGCGGCGGATGACGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGTGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTa                                                                     >  2:215690/1‑150 (MQ=255)                                                                                   tgtCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCg                                                                  <  2:1098926/150‑1 (MQ=255)                                                                                    gtCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCgg                                                                 >  1:870310/1‑150 (MQ=255)                                                                                       cagccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCAc                                                              >  1:363021‑M1/63‑150 (MQ=255)                                                                                       cGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTggg                                                                                                                                 >  2:465602/1‑83 (MQ=255)                                                                                       cGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTggg                                                                                                                                 <  1:465602/83‑1 (MQ=255)                                                                                       cGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCAc                                                              >  1:1013759/1‑150 (MQ=255)                                                                                        agccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACg                                                             >  1:599026‑M1/62‑150 (MQ=255)                                                                                                    cggATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGgtg                                                 <  1:1329342/150‑1 (MQ=255)                                                                                                     ggATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGgtgt                                                >  1:1080800/1‑150 (MQ=255)                                                                                                               ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTa                                                         >  1:1207267/1‑131 (MQ=255)                                                                                                               ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTa                                                         <  2:1207267/131‑1 (MQ=255)                                                                                                               ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATaa                                      >  1:618200/1‑150 (MQ=255)                                                                                                                   gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACgg                                                            >  2:910175/1‑124 (MQ=255)                                                                                                                   gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACgg                                                            <  1:910175/124‑1 (MQ=255)                                                                                                                   gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGcc                                  >  1:473191/1‑150 (MQ=255)                                                                                                                    ccAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATc                                                                                     >  2:1245010/1‑98 (MQ=255)                                                                                                                    ccAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATc                                                                                     <  1:1245010/98‑1 (MQ=255)                                                                                                                     caacaaCTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAAc                                     <  2:636830/145‑1 (MQ=255)                                                                                                                     caacaaCTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAAc                                     >  1:636830/1‑145 (MQ=255)                                                                                                                      aacaacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAg                               >  2:177479/1‑150 (MQ=255)                                                                                                                      aacaacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGCCGTAGGCAGCGGCACGAGCAGCCAGGTGTCCAACTATAACGCCAAg                               >  2:1083917/1‑150 (MQ=255)                                                                                                                        caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCaa                                            <  2:679811/135‑1 (MQ=255)                                                                                                                        caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCaa                                            >  1:679811/1‑135 (MQ=255)                                                                                                                        caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGt                             <  2:1111795/150‑1 (MQ=255)                                                                                                                         aacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTc                            <  2:870310/150‑1 (MQ=255)                                                                                                                          acTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCt                           <  2:1147378/150‑1 (MQ=255)                                                                                                                            tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTc                                              >  1:1396252/1‑129 (MQ=255)                                                                                                                            tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTc                                              <  2:1396252/129‑1 (MQ=255)                                                                                                                            tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCtat                         <  2:1080800/150‑1 (MQ=255)                                                                                                                              ccTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATAc                       <  2:1382403/150‑1 (MQ=255)                                                                                                                                         aCATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGTGGCTGCCAGGCGTTACAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGa            <  1:728122/150‑1 (MQ=255)                                                                                                                                                   aaGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGc  <  1:121410/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTCGGCACGGTGAGCCAGGGCATAAACGTGTCATGCACCAAGGGCAGCAGCTACACGGTAGGGCTGGGTGACGGGCAGAACGTGTCCGGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGC  >  NC_002947/2696776‑2697071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.