New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2696924 =	46 (0.880)	3 (0.060)	3/232	NT	6.9%	coding (782/972 nt)	PP_2363	hypothetical protein
	?	NC_002947	2697012 =	37 (0.750)					coding (870/972 nt)	PP_2363	hypothetical protein

GGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTCGCGACGGGCT  >  NC_002947/2696863‑2697161                                                                                                                                                      |                                                                                                                                                      agccggcggtgtcgcctgatcggtatagaccttggcgttatagttgaacacctggctacccGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACg                                                                                                                                                       >  1:599026‑M1/62‑150 (MQ=255)             cggATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGgtg                                                                                                                                           <  1:1329342/150‑1 (MQ=255)              ggATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGgtgt                                                                                                                                          >  1:1080800/1‑150 (MQ=255)                        ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTa                                                                                                                                                   >  1:1207267/1‑131 (MQ=255)                        ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTa                                                                                                                                                   <  2:1207267/131‑1 (MQ=255)                        ttCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATaa                                                                                                                                >  1:618200/1‑150 (MQ=255)                            gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACgg                                                                                                                                                      <  1:910175/124‑1 (MQ=255)                            gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACgg                                                                                                                                                      >  2:910175/1‑124 (MQ=255)                            gCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGcc                                                                                                                            >  1:473191/1‑150 (MQ=255)                              caacaaCTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAAc                                                                                                                               <  2:636830/145‑1 (MQ=255)                              caacaaCTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAAc                                                                                                                               >  1:636830/1‑145 (MQ=255)                               aacaacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAg                                                                                                                         >  2:177479/1‑150 (MQ=255)                               aacaacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGCCGTAGGCAGCGGCACGAGCAGCCAGGTGTCCAACTATAACGCCAAg                                                                                                                         >  2:1083917/1‑150 (MQ=255)                                 caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCaa                                                                                                                                      <  2:679811/135‑1 (MQ=255)                                 caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCaa                                                                                                                                      >  1:679811/1‑135 (MQ=255)                                 caacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGt                                                                                                                       <  2:1111795/150‑1 (MQ=255)                                  aacTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTc                                                                                                                      <  2:870310/150‑1 (MQ=255)                                   acTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCt                                                                                                                     <  2:1147378/150‑1 (MQ=255)                                     tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTc                                                                                                                                        >  1:1396252/1‑129 (MQ=255)                                     tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTc                                                                                                                                        <  2:1396252/129‑1 (MQ=255)                                     tACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCtat                                                                                                                   <  2:1080800/150‑1 (MQ=255)                                       ccTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATAc                                                                                                                 <  2:1382403/150‑1 (MQ=255)                                                  aCATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGTGGCTGCCAGGCGTTACAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGa                                                                                                      <  1:728122/150‑1 (MQ=255)                                                            aaGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGc                                                                                            <  1:121410/150‑1 (MQ=255)                                                             cgtgccggtacctacgccggggttgatgtcggcatccgtactggaacgcctggcagccccggacgccccccagcgcacggtgccggcacGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCt                                                                                           >  1:599026‑M2/90‑150 (MQ=255)                                                              gtgccggtacctacgccggggttgatgtcggcatccgtactggaacgcctggcagccccggacgccccccagcgcacggtgccggcacGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTg                                                                                          >  1:363021‑M2/89‑150 (MQ=255)                                                                        ctacgccggggttgatgtcggcatccgtactggaacgcctggcagccccggacgccccccagcgcacggtgccggcacGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTacac                                                                                <  2:363021‑M2/72‑1 (MQ=255)                                                                                    ggCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCGGACATCAACCCCGGCGGAGGTACCGGCGCGGGTAGCCAGGTGTTCAACTATAACGCGAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGAt                                                                    >  2:203421/1‑150 (MQ=255)                                                                                     gCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATa                                                                   >  2:476135/1‑150 (MQ=255)                                                                                       gTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAgt                                                                         >  2:237132/1‑142 (MQ=255)                                                                                       gTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAgt                                                                         <  1:237132/142‑1 (MQ=255)                                                                                               gggcggggCGTTCCAGGAGGGATGCCGAAATCAACCCCGGCGTAGGTACCGGCACGGGTAGCGAGGTGTGCAACGATAACGCCAAGGTCGATACCGATCAGGTGACACCGCCGGCTGCGAAGTACACCGACAGGGTGATAGTGGATGTGc                                                         <  2:34500/144‑1 (MQ=255)                                                                                                 gCCAGGCGTTCCAGTACGGATACCGTCATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAg                                                       >  1:622139/1‑150 (MQ=255)                                                                                                    aGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACAccgccg                                                                                              >  2:779475/1‑108 (MQ=255)                                                                                                    aGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACAccgccg                                                                                              <  1:779475/108‑1 (MQ=255)                                                                                                         ttCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAAc                                               <  1:476135/150‑1 (MQ=255)                                                                                                             aGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAAcggcg                                           <  1:177479/150‑1 (MQ=255)                                                                                                                   gATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAAt                                     <  1:566071/150‑1 (MQ=255)                                                                                                                    aTGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATa                                    >  1:868471/1‑150 (MQ=255)                                                                                                                        cGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATAcccc                                <  1:215690/150‑1 (MQ=255)                                                                                                                         gACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATAccccc                               >  2:1366938/1‑150 (MQ=255)                                                                                                                         gACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATAccccc                               >  2:717562/1‑150 (MQ=255)                                                                                                                            aTCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGaa                            <  2:473191/150‑1 (MQ=255)                                                                                                                               aaCCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAagca                         <  2:618200/150‑1 (MQ=255)                                                                                                                               aaCCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAagca                         <  1:1366938/150‑1 (MQ=255)                                                                                                                                            gTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTc            >  1:923455/1‑150 (MQ=255)                                                                                                                                              aCCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTcgc          >  1:732585/1‑150 (MQ=255)                                                                                                                                                  gcacGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTc            <  2:490723‑M2/140‑1 (MQ=255)                                                                                                                                                  gcacGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTc            >  1:490723‑M2/5‑144 (MQ=255)                                                                                                                                                   cacGGGTAGCCAGGTGTTCAATTATATCGACAAGGTCTATACCGATCAGGCGGCACCGCGGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTCGCGACgg     <  2:622139‑M2/147‑1 (MQ=255)                                                                                                                                                      gggTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTCGCGACGGgct  <  1:1083917/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GGTGGGCGGCGGCGGATGAAGTCTTCGGCCAACAACTACCTGGCCTATGACATTTTCAAAAGTGCCGGCACCGTGCGCTGGGGGGCGTCCGGGGCTGCCAGGCGTTCCAGTACGGATGCCGACATCAACCCCGGCGTAGGTACCGGCACGGGTAGCCAGGTGTTCAACTATAACGCCAAGGTCTATACCGATCAGGCGACACCGCCGGCTGCGAACTACACCGACAGTGTGATACTGGATGTGCAGTTCTGAACGGCGGTCAATACCCCCGAAGCAGCCGCCGCCTGTCGCGACGGGCT  >  NC_002947/2696863‑2697161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.