New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2894634	38 (0.720)	7 (0.140)	6/240	NT	14.4%	coding (250/1392 nt)	PP_2549	hypothetical protein
	?	NC_002947	= 2894650	46 (0.900)					coding (266/1392 nt)	PP_2549	hypothetical protein

GGGTACACCGGCCTGTGGACGGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAG  >  NC_002947/2894487‑2894781                                                                                                                                                    |                                                                                                                                                     gggTACACCGGCCTGTGGACGGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTc                                                                                                                                                    <  1:77072/150‑1 (MQ=255)       acCGGCCTGTGGACGGCGCTGATGCTCAAGGCATCTGTACCGTCTTTGAATGTGTTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑Gc                                                                                                                                             <  2:1084331/150‑1 (MQ=255)                    cGGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCccgaacaggcgttcgagggtg                                                                                                                                 <  1:1381354‑M1/150‑22 (MQ=255)                     ggCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGc                                                                                                                               >  1:63560/1‑150 (MQ=255)                            aTGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCg                                                                                                                        >  2:1403329/1‑150 (MQ=255)                                   aGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGa                                                                                                                            <  2:743424/139‑1 (MQ=255)                                   aGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGa                                                                                                                            >  1:743424/1‑139 (MQ=255)                                        gCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGg                                                                                                                                    >  2:1259274‑M2/1‑125 (MQ=255)                                        gCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGg                                                                                                                                    <  1:1259274‑M2/126‑2 (MQ=255)                                            tACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTAATTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTg                                                                                                        >  2:209143/1‑150 (MQ=255)                                              ccGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAg                                                                                                      >  1:807880/1‑150 (MQ=255)                                                  aacTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCgg                                                                                                  >  1:630692/3‑150 (MQ=255)                                                              tgCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCATTCTCGGAC‑GTCTGTTCGGGGGGGCGGAGGCGGTGCGGCTTGTGCGTGAGTCGGAGCGCAGCATTa                                                                                      >  2:161727/1‑150 (MQ=255)                                                              tgCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTa                                                                                      >  2:127650/1‑150 (MQ=255)                                                                 tGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAg                                                                                   >  2:835145/1‑150 (MQ=255)                                                                       aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCg                                                                             <  2:630692/150‑1 (MQ=255)                                                                       aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCCCGAACAGGC‑GTTCGAgggtgaagtacttggcc                                                                                                                    >  2:27309‑M2/1‑94 (MQ=255)                                                                       aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCCCGAAC‑AGGCGTTCGAgggtgaagtacttggcc                                                                                                                    <  1:27309‑M2/111‑18 (MQ=255)                                                                         tccaaCATCTTTGTTGCCGGTGCCAGCGGCCGCAATGGGGGCTTTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTGGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg                                                                           <  2:632173/146‑1 (MQ=255)                                                                         gCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg                                                                           <  1:1013011/150‑1 (MQ=255)                                                                         gCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAAAAGAGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg                                                                           <  1:653874/150‑1 (MQ=255)                                                                          ccGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGCAGCGCAGCATTACAGCCACTgggg                                                                          <  2:799014/150‑1 (MQ=255)                                                                          ccGACATCTGTGGTACCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAg                                                                                                                           >  1:460595/1‑101 (MQ=255)                                                                          ccGACATCTGTGGTACCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAg                                                                                                                           <  2:460595/101‑1 (MQ=255)                                                                           cGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggggg                                                                         >  1:632173/1‑149 (MQ=255)                                                                           cGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgt                                                                         >  2:30111/1‑150 (MQ=255)                                                                           cGACATAGGTGGTGCCGGTGCCCGCGGCCGCACTGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCCGTTCGGGGCGCCGCAAGCGGTACGGCTGGTGCGGGAGACGTCGCGCAGCATCAACGACAGCGGGgt                                                                         >  2:640445/1‑150 (MQ=255)                                                                            gACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCTAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGAGGGAGTCGGAGCGCAGCATTACAGACATCGGGgtg                                                                        <  1:824711/150‑1 (MQ=255)                                                                            gACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCgggggg                                                                        >  1:951961/1‑148 (MQ=255)                                                                             tcacccgtggtgCCGGTGCCAGCGGCCGCCATGGGGCCTGCGCGTTGTCCTGGTCGGCTAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGTCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgtgt                                                                       <  2:234397/144‑1 (MQ=255)                                                                             aCATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgtgt                                                                       >  2:710849/1‑150 (MQ=255)                                                                                    tggtgCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTgcgc                                                                <  1:835145/150‑1 (MQ=255)                                                                                      gtgccggtgccAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCtcgaacaggcgttcgagg                                                                                                                                    >  2:77936‑M1/1‑63 (MQ=255)                                                                                      gtgccggtgccAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCtcgaacaggcgttcgagg                                                                                                                                    <  1:77936‑M1/81‑19 (MQ=255)                                                                                           ggtgccAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAAt                                                         <  2:807880/150‑1 (MQ=255)                                                                                            gagccAGCGGCCGCAATGGGGGCTGTGTGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATg                                                        <  2:705508/148‑1 (MQ=255)                                                                                                 aGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATc                                                   >  2:1163724/1‑150 (MQ=255)                                                                                                    ggCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCgg                                                              >  2:97128/1‑136 (MQ=255)                                                                                                    ggCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCgg                                                              <  1:97128/136‑1 (MQ=255)                                                                                                                            tCCTGGTCGGCCAAGTACTTCACCCccgaacaggcgttcgagg                                                                                                                                    >  2:927462‑M1/1‑25 (MQ=255)                                                                                                                            tCCTGGTCGGCCAAGTACTTCACCCccgaacaggcgttcgagg                                                                                                                                    <  1:927462‑M1/43‑19 (MQ=255)                                                                                                                              cTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGa                                                                                                       >  2:25799/1‑69 (MQ=255)                                                                                                                              cTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGa                                                                                                       <  1:25799/69‑1 (MQ=255)                                                                                                                               tGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTg                     >  2:236702/1‑150 (MQ=255)                                                                                                                                    ggCCAAGTACTTCACCCtcgaacgcctgttcgggggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcct                                                        >  2:27309‑M1/1‑17 (MQ=255)                                                                                                                                    ggCCAAGTACTTCACCCtcgaacgcctgttcgggggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcct                                                        <  1:27309‑M1/111‑95 (MQ=255)                                                                                                                                    ggCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTacac                >  1:144992/1‑150 (MQ=255)                                                                                                                                      ccAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACgg              >  1:370169/1‑150 (MQ=255)                                                                                                                                          gTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGccac          <  1:1403329/150‑1 (MQ=255)                                                                                                                                             cTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCaa       >  1:1025109/1‑150 (MQ=255)                                                                                                                                                cACCCTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcctcgatcagcaccacatccagggccggtaccgcttccttgagcatcagcgccg    <  1:1381354‑M2/150‑130 (MQ=255)                                                                                                                                                  cccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAg  <  1:30111/150‑1 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccagga                                                                                                            <  1:927462‑M2/43‑26 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccagga                                                                                                            >  2:927462‑M2/1‑18 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGt                                                                                                         >  1:1111154/1‑46 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGt                                                                                                         <  2:1111154/46‑1 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGAgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcac                                                                      <  1:77936‑M2/81‑64 (MQ=255)                                                                                                                                                   ccTCGAAC‑GCCTGTTCGAgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcac                                                                      >  2:77936‑M2/1‑18 (MQ=255)                                                                                                                                                    cccgaacaggcgttcgagggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcctcgatcagcaccacatccagggccggtaccgc                         <  1:1259274‑M1/126‑126 (MQ=255)                                                                                                                                                    cccgaacaggcgttcgagggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcctcgatcagcaccacatccagggccggtaccgc                         >  2:1259274‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGGTACACCGGCCTGTGGACGGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAG  >  NC_002947/2894487‑2894781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.