New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2894634 | 38 (0.720) | 7 (0.140) | 6/240 | NT | 14.4% | coding (250/1392 nt) | PP_2549 | hypothetical protein |
? | NC_002947 | = 2894650 | 46 (0.900) | coding (266/1392 nt) | PP_2549 | hypothetical protein |
GGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCGGT > NC_002947/2894507‑2894792 | ggCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGc > 1:63560/1‑150 (MQ=255) aTGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCg > 2:1403329/1‑150 (MQ=255) aGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGa > 1:743424/1‑139 (MQ=255) aGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGa < 2:743424/139‑1 (MQ=255) gCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGg < 1:1259274‑M2/126‑2 (MQ=255) gCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGg > 2:1259274‑M2/1‑125 (MQ=255) tACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTAATTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTg > 2:209143/1‑150 (MQ=255) ccGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAg > 1:807880/1‑150 (MQ=255) aacTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCgg > 1:630692/3‑150 (MQ=255) tgCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCATTCTCGGAC‑GTCTGTTCGGGGGGGCGGAGGCGGTGCGGCTTGTGCGTGAGTCGGAGCGCAGCATTa > 2:161727/1‑150 (MQ=255) tgCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTa > 2:127650/1‑150 (MQ=255) tGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAg > 2:835145/1‑150 (MQ=255) aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCg < 2:630692/150‑1 (MQ=255) aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCCCGAACAGGC‑GTTCGAgggtgaagtacttggcc > 2:27309‑M2/1‑94 (MQ=255) aGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCCCGAAC‑AGGCGTTCGAgggtgaagtacttggcc < 1:27309‑M2/111‑18 (MQ=255) tccaaCATCTTTGTTGCCGGTGCCAGCGGCCGCAATGGGGGCTTTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTGGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg < 2:632173/146‑1 (MQ=255) gCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg < 1:1013011/150‑1 (MQ=255) gCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAAAAGAGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggg < 1:653874/150‑1 (MQ=255) ccGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGCAGCGCAGCATTACAGCCACTgggg < 2:799014/150‑1 (MQ=255) ccGACATCTGTGGTACCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAg > 1:460595/1‑101 (MQ=255) ccGACATCTGTGGTACCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAg < 2:460595/101‑1 (MQ=255) cGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCggggg > 1:632173/1‑149 (MQ=255) cGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgt > 2:30111/1‑150 (MQ=255) cGACATAGGTGGTGCCGGTGCCCGCGGCCGCACTGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCCGTTCGGGGCGCCGCAAGCGGTACGGCTGGTGCGGGAGACGTCGCGCAGCATCAACGACAGCGGGgt > 2:640445/1‑150 (MQ=255) gACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCTAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGAGGGAGTCGGAGCGCAGCATTACAGACATCGGGgtg < 1:824711/150‑1 (MQ=255) gACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCgggggg > 1:951961/1‑148 (MQ=255) tcacccgtggtgCCGGTGCCAGCGGCCGCCATGGGGCCTGCGCGTTGTCCTGGTCGGCTAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGTCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgtgt < 2:234397/144‑1 (MQ=255) aCATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGgtgt > 2:710849/1‑150 (MQ=255) tggtgCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTgcgc < 1:835145/150‑1 (MQ=255) ggtgccAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAAt < 2:807880/150‑1 (MQ=255) gagccAGCGGCCGCAATGGGGGCTGTGTGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATg < 2:705508/148‑1 (MQ=255) aGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATc > 2:1163724/1‑150 (MQ=255) ggCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCgg < 1:97128/136‑1 (MQ=255) ggCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCgg > 2:97128/1‑136 (MQ=255) cTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGa > 2:25799/1‑69 (MQ=255) cTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGa < 1:25799/69‑1 (MQ=255) tGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTg > 2:236702/1‑150 (MQ=255) ggCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTacac > 1:144992/1‑150 (MQ=255) ccAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACgg > 1:370169/1‑150 (MQ=255) gTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGccac < 1:1403329/150‑1 (MQ=255) cTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCaa > 1:1025109/1‑150 (MQ=255) cACCCTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcaccacagatgtcggcctcgatcagcaccacatccagggccggtaccgcttccttgagcatcagcgccg < 1:1381354‑M2/150‑130 (MQ=255) cccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAg < 1:30111/150‑1 (MQ=255) ccTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccagga < 1:927462‑M2/43‑26 (MQ=255) ccTCGAAC‑GCCTGTTCGGgggtgaagtacttggccgaccagga > 2:927462‑M2/1‑18 (MQ=255) ccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGt > 1:1111154/1‑46 (MQ=255) ccTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGt < 2:1111154/46‑1 (MQ=255) ccTCGAAC‑GCCTGTTCGAgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcac > 2:77936‑M2/1‑18 (MQ=255) ccTCGAAC‑GCCTGTTCGAgggtgaagtacttggccgaccaggacaacgcacagcccccattgcggccgctggcaccggcac < 1:77936‑M2/81‑64 (MQ=255) tCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGccc > 1:17316/1‑150 (MQ=255) tCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGccc > 1:161842/1‑150 (MQ=255) tCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACCGCCACCAACGCAGccc > 2:461686/1‑150 (MQ=255) cGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCa < 1:209143/150‑1 (MQ=255) aaC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAgg > 1:129388/1‑150 (MQ=255) ccTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATGACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCgg > 1:36292/1‑150 (MQ=255) cTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGTGCCGGCCCGCCGGATTGCAGCGATCATGCTGAGATCCCTGGGGTAGATGATGTACATCGACTTCCGCCTGGTCGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCGGt > 2:872336/1‑150 (MQ=255) ttCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCGGt > 1:255730/1‑147 (MQ=255) ttCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCGGt < 2:255730/147‑1 (MQ=255) | GGCGCTGATGCTCAAGGAAGCGGTACCGGCCCTGGATGTGGTGCTGATCGAGGCCGACATCTGTGGTGCCGGTGCCAGCGGCCGCAATGGGGGCTGTGCGTTGTCCTGGTCGGCCAAGTACTTCACCCTCGAAC‑GCCTGTTCGGGGGGGCGGAGGCGGTGCGGCTGGTGCGTGAGTCGGAGCGCAGCATTACAGACATCGGGGTGTTCTGCGCGGCCAATGGCATCGACTGCGACTTCCGCCTGGACGGCACGCTGTACACGGCCACCAACGCAGCCCAGGTCGGT > NC_002947/2894507‑2894792 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |