New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3078868 =	49 (0.930)	3 (0.060)	3/226	NT	6.3%	coding (441/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	3078940 =	44 (0.910)					coding (369/1410 nt)	PP_2688	hypothetical protein

GATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTC  >  NC_002947/3078726‑3079014                                                                                                                                               |                                                                                                                                                   gATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGAt                                                                                                                                             <  1:549095/150‑1 (MQ=255)  aTCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATc                                                                                                                                            >  2:1072733/1‑150 (MQ=255)    cGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGa                                                                                                                                          <  1:415812/150‑1 (MQ=255)       tGGGCTCGATGCGCTAGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGacac                                                                                                                                       <  1:67821/150‑1 (MQ=255)          gcgcGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGAt                                                                                                                                             >  2:1403313/1‑141 (MQ=255)          gcgcGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGAt                                                                                                                                             <  1:1403313/141‑1 (MQ=255)               aTGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAata                                                                                                                               >  1:753853/1‑150 (MQ=255)                   gcTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATgcg                                                                                                                           >  1:720854/1‑150 (MQ=255)                           gcAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGc                                                                                                                   >  1:810131/1‑150 (MQ=255)                              aaCAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCa                                                                                                                <  2:753853/150‑1 (MQ=255)                                   ttCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGa                                                                                                                                          >  1:1093571/1‑119 (MQ=255)                                   ttCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGa                                                                                                                                          <  2:1093571/119‑1 (MQ=255)                                       gggAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAgg                                                                                                       <  2:737825/150‑1 (MQ=255)                                       gggAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAgg                                                                                                       >  1:567120/1‑150 (MQ=255)                                       aacgggtacaggcgctgaacctgttcctggaggacatctaccacgaccaacgcattctcaaggccggcatcatcccgccagagcaagtgctggccaacgagggcTAc                                                                                                                                                  >  2:1291493‑M1/105‑107 (MQ=255)                                       aacgggtacaggcgctgaacctgttcctggaggacatctaccacgaccaacgcattctcaaggccggcatcatcccgccagagcaagtgctggccaacgagggcTAc                                                                                                                                                  <  1:1291493‑M1/3‑1 (MQ=255)                                             aGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAgg                                                                                                 >  2:84651/1‑150 (MQ=255)                                               gcgcATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGcc                                                                                               >  1:598102/1‑150 (MQ=255)                                                      atcatcTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATg                                                                                        <  2:567120/150‑1 (MQ=255)                                                      atcatcTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATg                                                                                        <  1:550934/150‑1 (MQ=255)                                                       tcatcTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATGGCCGTCACGTACAAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATgg                                                                                       >  2:1405271/1‑150 (MQ=255)                                                       tcatcTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATgg                                                                                       >  1:1355471/1‑150 (MQ=255)                                                       gaacctgttcctggaggacatctaccacgaccaacgcattctcaaggccggcatcatcccgccagagcaagtgctggccaacgagggcTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATgg                                                                                       >  1:1144657‑M1/89‑150 (MQ=255)                                                        catcTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGc                                                                                      <  1:84651/150‑1 (MQ=255)                                                           cTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGAt                                                                                   <  2:1355471/150‑1 (MQ=255)                                                              gCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTg                                                                                <  1:1323045/150‑1 (MQ=255)                                                                    ttCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATTGCGCGCTGGTAGcc                                                                          >  2:1150718/1‑150 (MQ=255)                                                                     tCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGccc                                                                         <  1:1150718/150‑1 (MQ=255)                                                                       gAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCt                                                                                             <  2:919838/128‑1 (MQ=255)                                                                       gAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCt                                                                                             >  1:919838/1‑128 (MQ=255)                                                                           tctaccacgaccaacgcattctcaaggccggcatcatccagccagagcaagtgctggccaacgagggcTAc                                                                                                                                                  >  1:902289‑M1/69‑71 (MQ=255)                                                                           tctaccacgaccaacgcattctcaaggccggcatcatccagccagagcaagtgctggccaacgagggcTAc                                                                                                                                                  <  2:902289‑M1/3‑1 (MQ=255)                                                                           aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                   <  2:567146/150‑1 (MQ=255)                                                                           aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                   >  1:445087/1‑150 (MQ=255)                                                                           aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                   >  2:448040/1‑150 (MQ=255)                                                                               aGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCa                                                               <  2:810131/150‑1 (MQ=255)                                                                               aGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCa                                                               <  2:445087/150‑1 (MQ=255)                                                                                 cTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACa                                                                                                                     >  1:1359793/1‑94 (MQ=255)                                                                                 cTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACa                                                                                                                     <  2:1359793/94‑1 (MQ=255)                                                                                      gccgcTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGaa                                                                                                         <  1:1120795/101‑1 (MQ=255)                                                                                      gccgcTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGaa                                                                                                         >  2:1120795/1‑101 (MQ=255)                                                                                         cgcattctcaaggccggcatcatcccgccagagcaagtgctggccaacgagggcTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTa                                                                             >  1:1406007‑M1/55‑126 (MQ=255)                                                                                         cgcattctcaaggccggcatcatcccgccagagcaagtgctggccaacgagggcTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTa                                                                             <  2:1406007‑M1/72‑1 (MQ=255)                                                                                            gggggTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTgg                                                  <  1:1072733/150‑1 (MQ=255)                                                                                               ggTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCg                                                                                                                                     <  2:165856/64‑1 (MQ=255)                                                                                               ggTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCg                                                                                                                                     >  1:165856/1‑64 (MQ=255)                                                                                                 tGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCggta                                             <  1:524528/150‑3 (MQ=255)                                                                                                    gcAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGgatga                                          >  2:631870/1‑150 (MQ=255)                                                                                                                ccAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAATGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTgt                              >  2:91824/1‑149 (MQ=255)                                                                                                                 cAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTgag                             >  2:425074/1‑150 (MQ=255)                                                                                                                    cACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAAt                          <  2:598102/150‑1 (MQ=255)                                                                                                                    cACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAAt                          <  1:631870/150‑1 (MQ=255)                                                                                                                        aaGTAGCTGCCAACGCCGTCACGTACCAGAGCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCACGCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGt                      <  1:91824/150‑1 (MQ=255)                                                                                                                                 ccATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTgg             >  1:1372554/1‑150 (MQ=255)                                                                                                                                    tCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAg          >  1:473665/1‑150 (MQ=255)                                                                                                                                         gTCACGTACCAGATCGACACCGGCCATATGCGCATACAGCCCACGGTGGAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGTGAATGCGTTGGTCGTGGTAGATGtc     >  1:470932/1‑150 (MQ=255)                                                                                                                                          tCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcc    >  2:11850/1‑150 (MQ=255)                                                                                                                                            aCGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctc  <  1:767143/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   GATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTC  >  NC_002947/3078726‑3079014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.