New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3078868 =	49 (0.930)	3 (0.060)	3/226	NT	6.3%	coding (441/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	3078940 =	44 (0.910)					coding (369/1410 nt)	PP_2688	hypothetical protein

TTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCTCGACCGTGCGCCATTCG  >  NC_002947/3078793‑3079075                                                                                                                                                    |                                                                                                                                        ttCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATTGCGCGCTGGTAGcc                                                                                                                                       >  2:1150718/1‑150 (MQ=255)  tCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGccc                                                                                                                                      <  1:1150718/150‑1 (MQ=255)        aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                                                                                <  2:567146/150‑1 (MQ=255)        aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                                                                                >  2:448040/1‑150 (MQ=255)        aTGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTg                                                                                                                                >  1:445087/1‑150 (MQ=255)            aGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCa                                                                                                                            <  2:810131/150‑1 (MQ=255)            aGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCa                                                                                                                            <  2:445087/150‑1 (MQ=255)                         gggggTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTgg                                                                                                               <  1:1072733/150‑1 (MQ=255)                              tGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCggta                                                                                                          <  1:524528/150‑3 (MQ=255)                                 gcAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGgatga                                                                                                       >  2:631870/1‑150 (MQ=255)                                             ccAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAATGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTgt                                                                                           >  2:91824/1‑149 (MQ=255)                                              cAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTgag                                                                                          >  2:425074/1‑150 (MQ=255)                                                 cACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAAt                                                                                       <  1:631870/150‑1 (MQ=255)                                                 cACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAAt                                                                                       <  2:598102/150‑1 (MQ=255)                                                     aaGTAGCTGCCAACGCCGTCACGTACCAGAGCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCACGCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGt                                                                                   <  1:91824/150‑1 (MQ=255)                                                              ccATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTgg                                                                          >  1:1372554/1‑150 (MQ=255)                                                                 tCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAg                                                                       >  1:473665/1‑150 (MQ=255)                                                                      gTCACGTACCAGATCGACACCGGCCATATGCGCATACAGCCCACGGTGGAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGTGAATGCGTTGGTCGTGGTAGATGtc                                                                  >  1:470932/1‑150 (MQ=255)                                                                       tCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcc                                                                 >  2:11850/1‑150 (MQ=255)                                                                         aCGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctc                                                               <  1:767143/150‑1 (MQ=255)                                                                            taccagatcgccatgcagggcctggaccttcaccgtgggctgtatgcgcatattgccggtgtcgatctggtaGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCg                                                                                    <  2:1406007‑M2/54‑1 (MQ=255)                                                                            taccagatcgccatgcagggcctggaccttcaccgtgggctgtatgcgcatattgccggtgtcgatctggtaGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCg                                                                                    >  1:1406007‑M2/73‑126 (MQ=255)                                                                                   TCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAgg                                                     >  1:425074‑M1/1‑150 (MQ=255)                                                                                      ccatgcagggcctggaccttcaccgtgggctgtatgcgcatattgccggtgtcgatctggtaGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTc                                                  >  1:1144657‑M2/63‑150 (MQ=255)                                                                                        acCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAg                                                >  2:191083/1‑150 (MQ=255)                                                                                        acCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAg                                                >  2:914142/1‑150 (MQ=255)                                                                                        acCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGGAGATGTCCTCCAGGAACAGGTTCAg                                                >  2:1301540/1‑150 (MQ=255)                                                                                          cGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAgcg                                              >  2:1303505/1‑150 (MQ=255)                                                                                            gCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAg                                                      <  1:1024863/140‑1 (MQ=255)                                                                                            gCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAg                                                      >  2:1024863/1‑140 (MQ=255)                                                                                                      cATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGtt                                  <  1:11850/150‑1 (MQ=255)                                                                                                      cATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCACGAACAGGTTCAGCGCCTGTACCCGtt                                  <  1:1405271/150‑1 (MQ=255)                                                                                                        tACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTgg                                                                          <  1:459812/108‑1 (MQ=255)                                                                                                        tACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTgg                                                                          >  2:459812/1‑108 (MQ=255)                                                                                                        tACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACACGTTCAGCGCCTGTACCCGTTGa                                >  2:662719/1‑150 (MQ=255)                                                                                                          cAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAAt                              <  2:720854/150‑1 (MQ=255)                                                                                                             cccACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCTTTGAGAATGCGTTGGTCGTGGTAGAt                                                                     <  1:548219/108‑1 (MQ=255)                                                                                                             cccACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGAt                                                                     >  2:548219/1‑108 (MQ=255)                                                                                                              ccACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAg                          >  1:166323/1‑150 (MQ=255)                                                                                                               cACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctc                                                               <  1:1322677/112‑1 (MQ=255)                                                                                                               cACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctc                                                               >  2:1322677/1‑112 (MQ=255)                                                                                                                    tGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGc                    <  1:1303505/150‑1 (MQ=255)                                                                                                                    tGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGc                    <  2:473665/150‑1 (MQ=255)                                                                                                                     gAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTg                                                                           >  2:434158/1‑94 (MQ=255)                                                                                                                     gAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTg                                                                           <  1:434158/94‑1 (MQ=255)                                                                                                                         gTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCt                   <  2:640619/146‑1 (MQ=255)                                                                                                                         gTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCt                   >  1:640619/1‑146 (MQ=255)                                                                                                                                 ccTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCTCGACCGTGCGcc       >  1:130081/1‑150 (MQ=255)                                                                                                                                  cTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGtt                                  >  2:699818/1‑122 (MQ=255)                                                                                                                                  cTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGtt                                  <  1:699818/122‑1 (MQ=255)                                                                                                                                     cATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctcc                                                              >  1:1390074/1‑91 (MQ=255)                                                                                                                                     cATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGtcctcc                                                              <  2:1390074/91‑1 (MQ=255)                                                                                                                                      aTGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCTCGACCGTGCGCCATTCg  >  2:524162/1‑150 (MQ=255)                                                                                                                                                 gtaGCCCTCGTTGGCCAGCACTTGCTCTGGCTGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGa                                                                      <  2:902289‑M2/68‑1 (MQ=255)                                                                                                                                                 gtaGCCCTCGTTGGCCAGCACTTGCTCTGGCTGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGa                                                                      >  1:902289‑M2/4‑71 (MQ=255)                                                                                                                                                 gtaGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGtt                                  >  2:1291493‑M2/4‑107 (MQ=255)                                                                                                                                                 gtaGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGtt                                  <  1:1291493‑M2/104‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                        TTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGGCCCTGCATGGCGATCTGGTAGCCCTCGTTGGCCAGCACTTGCTCTGGCGGGATGATGCCGGCCTTGAGAATGCGTTGGTCGTGGTAGATGTCCTCCAGGAACAGGTTCAGCGCCTGTACCCGTTGAATGCAGCCACGCTCGACCGTGCGCCATTCG  >  NC_002947/3078793‑3079075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.