New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3755057	41 (0.780)	5 (0.100)	4/232	NT	12.4%	coding (455/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein
	?	NC_002947	= 3755090	32 (0.650)					coding (488/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein

CCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTACCTACAACCCCAACCCGGTTTTCGCCCT  >  NC_002947/3754919‑3755204                                                                                                                                           |                                                                                                                                                    cccGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGc                                                                                                                                          >  2:358265/1‑150 (MQ=255)       aTCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATcc                                                                                                                                    <  1:358265/150‑1 (MQ=255)        tCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCa                                                                                                                                   >  2:138263/1‑150 (MQ=255)           gAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCgcgcaggtcagccgatggatc                                                                                                                                >  1:1306124‑M1/1‑129 (MQ=255)              cTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGTGCCAAGCGAGGTGCAGATCCATCGGCt                                                                                                                             <  2:164575/150‑1 (MQ=255)              cTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATGCATCGGCt                                                                                                                             <  2:491001/150‑1 (MQ=255)              cTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCt                                                                                                                             <  2:995240/150‑1 (MQ=255)                       ttttCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTgcgc                                                                                                                    >  1:432783/1‑150 (MQ=255)                          tCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCgcgcaggtcagccgatggatctgcacctcgcttggc                                                                                                                 <  1:1176240‑M1/150‑37 (MQ=255)                          tCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCgcgcaggtcagccgatggatctgcacctcgcttggc                                                                                                                 <  2:1306124‑M1/150‑37 (MQ=255)                           cGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggcg                                                                                                                >  2:208830‑M2/1‑146 (MQ=255)                             cAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGc                                                                                                                                          >  2:564295/1‑122 (MQ=255)                             cAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGc                                                                                                                                          <  1:564295/122‑1 (MQ=255)                                          gggTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCAtt                                                                                                 <  2:432783/150‑1 (MQ=255)                                             tACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCgcgcaggtcagccgatggatctgcacctcgcttg                                                                                                                   >  2:1238327‑M1/1‑95 (MQ=255)                                             tACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCgcgcaggtcagccgatggatctgcacctcgcttg                                                                                                                   <  1:1238327‑M1/129‑35 (MQ=255)                                                aaTCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATc                                                                                           >  2:378315/1‑150 (MQ=255)                                                  tCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATACATCGGCTGACCGGCTCGGTGCAAGTGGCTGCCATTGCGATCCg                                                                                         >  2:308538/1‑150 (MQ=255)                                                    caCGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAAAGCCCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGc                                                                                       <  1:785250/149‑1 (MQ=255)                                                       gCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATg                                                                                    >  2:1322061/1‑150 (MQ=255)                                                        cTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGa                                                                                   <  1:1035933/150‑1 (MQ=255)                                                          ccTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGc                                                                                 <  2:1023994/150‑1 (MQ=255)                                                                    gTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCa                                                                       >  2:128964/1‑150 (MQ=255)                                                                     ttGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCaa                                                                      >  1:813059/1‑150 (MQ=255)                                                                             aCTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggc                                                                                                                 >  1:414915‑M2/1‑96 (MQ=255)                                                                             aCTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggc                                                                                                                 <  2:414915‑M2/99‑4 (MQ=255)                                                                                     aTGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCg                                                      >  1:1154786/1‑150 (MQ=255)                                                                                       gAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGaa                                                    <  2:1154786/150‑1 (MQ=255)                                                                                             tCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACgg                                              <  1:842539/150‑1 (MQ=255)                                                                                                       ggACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCAtt                                                                                                 <  2:1270483/89‑1 (MQ=255)                                                                                                       ggACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCAtt                                                                                                 >  1:1270483/1‑89 (MQ=255)                                                                                                       ggACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCAt                                    >  2:710125/1‑150 (MQ=255)                                                                                                        gACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCAtt                                   <  1:128964/150‑1 (MQ=255)                                                                                                         aCATTTGCGCTATACCAGGATCAAGCGATTGCGAAAAGCGGGGTGCAGATCCATCGTTTTTCCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTg                                  <  1:234694/150‑1 (MQ=255)                                                                                                              tGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTAc                             <  2:813059/150‑1 (MQ=255)                                                                                                              tGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTAc                             <  1:308538/150‑1 (MQ=255)                                                                                                              tGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTAc                             <  1:1322061/150‑1 (MQ=255)                                                                                                                cgcTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTACCt                           >  2:38551/1‑150 (MQ=255)                                                                                                                        cAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCAtt                                   >  1:832051/1‑134 (MQ=255)                                                                                                                        cAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCAtt                                   <  2:832051/134‑1 (MQ=255)                                                                                                                        cAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTACCTAcaacccc                   <  1:38551/150‑1 (MQ=255)                                                                                                                           gATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACg                                               >  2:13691/1‑119 (MQ=255)                                                                                                                           gATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACg                                               <  1:13691/119‑1 (MQ=255)                                                                                                                               aaGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGaa                                                    <  2:1367544/110‑1 (MQ=255)                                                                                                                               aaGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGaa                                                    >  1:1367544/1‑110 (MQ=255)                                                                                                                                aGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTc                                          >  1:848110/1‑119 (MQ=255)                                                                                                                                aGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTc                                          <  2:848110/119‑1 (MQ=255)                                                                                                                                 gCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGc                                                                                                     >  2:778379/1‑59 (MQ=255)                                                                                                                                 gCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGc                                                                                                     <  1:778379/59‑1 (MQ=255)                                                                                                                                        cgccgcgcaggtcagccgatggatctgcacctcgcttggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagtaatggcaacgaccagcaggagcgtagattgtaccctagcgccagactgcg   >  2:208830‑M1/1‑4 (MQ=255)                                                                                                                                         gccgcgcaggtcagccgatggatctgcacctcgcttggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagt                                                     <  2:414915‑M1/99‑97 (MQ=255)                                                                                                                                         gccgcgcaggtcagccgatggatctgcacctcgcttggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagt                                                     >  1:414915‑M1/1‑3 (MQ=255)                                                                                                                                         gcCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagtaatggcaacgaccagcaggagcgtagattgtaccctagcgccagactgcga  <  2:1306124‑M2/150‑115 (MQ=255)                                                                                                                                         gcCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagtaatggcaacgaccagcaggagcgtagattgtaccctagcgccagactgcga  <  1:1176240‑M2/150‑115 (MQ=255)                                                                                                                                           cAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagtaatggcaacgaccagcaggagcgtagattgta                     <  1:1238327‑M2/129‑96 (MQ=255)                                                                                                                                           cAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCggcgcaatcgcttgatcctggtatagcgcaaatgtcccaagaacggagccctcatgcgagagtaatggcaacgaccagcaggagcgtagattgta                     >  2:1238327‑M2/1‑34 (MQ=255)                                                                                                                                           |                                                                                                                                                    CCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGACATTTGCGCTATACCAGGATCAAGCGATTGCGCCAAGCGAGGTGCAGATCCATCGGCTGACCTGCGCGGCGCAACTGGCTGCCATTGCGATCCGGCATGAGCGTGACGGCCAACGTCTGGAGGAAAGCGAACAACGGTTTCGCTCATTGTTTACCTACAACCCCAACCCGGTTTTCGCCCT  >  NC_002947/3754919‑3755204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.