New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247709	35 (0.670)	3 (0.060)	3/232	NT	8.6%	coding (252/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247747	31 (0.630)					coding (214/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

CAGAAAACGCCGTGATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAG  >  NC_002947/4247561‑4247858                                                                                                                                                     |                                                                                                                                                      cAGAAAACGCCGTGATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTgg                                                                                                                                                      <  2:1297320/150‑1 (MQ=255)         gCCGTGATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCAACAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTg                                                                                                                                              <  1:747100/150‑1 (MQ=255)           cGTGATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGt                                                                                                                                            <  1:681121/150‑1 (MQ=255)              gATGGGCGCAGTCATGGCGCGCTTGTCCTGTGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACGATCATCGGACCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCAc                                                                                                                                         <  2:630458/150‑1 (MQ=255)              gATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCAc                                                                                                                                         <  2:1314615/150‑1 (MQ=255)                tGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGc                                                                                                                                       <  1:584692/150‑1 (MQ=255)                  ggCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCGAGCCCTTGCCCAGGCTGGCGGTTTGGATGACGCTGGAAATCGCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCGGATGGGGGTGGCGACGTTGGTCACGCCt                                                                                                                                     <  2:706342/150‑1 (MQ=255)                        gTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCg                                                                                                                               <  2:1161176/150‑1 (MQ=255)                            tGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGCCGTTGGTCACGCCTGCGCCGGtga                                                                                                                           >  2:567659/1‑150 (MQ=255)                            cgatgcgcTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGtga                                                                                                                           >  2:110772/5‑150 (MQ=255)                                   cTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGaa                                                                                                                    >  1:79939/1‑150 (MQ=255)                                     ggTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGCCCCCGCCTCGCCCTAGGCTTGGCCGATGGGGGTGGCGACGTTGGACACGCCTGGGCCGGTAATGCCGAAGc                                                                                                                  <  2:595038/150‑1 (MQ=255)                                      gTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGca                                                                                                                 >  2:1018595/1‑150 (MQ=255)                                      gTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGca                                                                                                                 <  2:980005/150‑1 (MQ=255)                                       tCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCAc                                                                                                                <  1:1058970‑M2/150‑2 (MQ=255)                                              tttCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTAGCCGATGGGGGTGtgcttcgtcatcaccggcctaggcgtgaccaacgtcgccaccc                                                                                                            <  1:924097‑M1/147‑44 (MQ=255)                                              tttCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTAGCCGATGGGGGTGtgcttcgtcatcaccggcctaggcgtgaccaacgtcgccaccc                                                                                                            >  2:924097‑M1/1‑104 (MQ=255)                                                 cATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcg                                                                                                      <  2:427477‑M1/150‑50 (MQ=255)                                                    gcaggcagCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGc                                                                                                   <  1:110772/150‑1 (MQ=255)                                                        gcagCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTg                                                                                                                                              <  2:1061197/103‑1 (MQ=255)                                                        gcagCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTg                                                                                                                                              >  1:1061197/1‑103 (MQ=255)                                                         cagccccagcccTTGCCCGGGCTGGCGGTGTGGTTGACGCGGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTG                                                                                              >  2:1155286‑M1/1‑150 (MQ=255)                                                               cagcccTTGCCCAGGCTGGCGGTGTGGTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGC                                                                                        >  1:1001804‑M1/1‑150 (MQ=255)                                                                           aGGCTGGCGGTGTGGTTGACGCTGACAAGCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGATGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCg                                                                            <  1:1290348/150‑1 (MQ=255)                                                                               tGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCa                                                                        <  2:407638/150‑1 (MQ=255)                                                                                 gCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATg                                                                      >  2:149104/1‑150 (MQ=255)                                                                                       tgGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCg                                                                <  2:840238/150‑1 (MQ=255)                                                                                         gTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATTAAGCCGgc                                                              <  2:1001804/150‑1 (MQ=255)                                                                                          ttGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGgcg                                                             >  1:1359576/1‑150 (MQ=255)                                                                                             aCGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCCTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGccc                                                          <  1:1307702/150‑1 (MQ=255)                                                                                                 tagAAATCACCAGCATCGGCACCGAGTCGGCATAGGATTGGCCGAAGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACACCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCCCCCTGCt                                                      >  2:294961/3‑150 (MQ=255)                                                                                                 tGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGAGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCt                                                      >  1:1103327/1‑150 (MQ=255)                                                                                                    aaaTCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGt                                                   <  2:1365696/150‑1 (MQ=255)                                                                                                       tCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACTTTGGTCACGCCTGGGCCGGTGATGAGGAAGCACACTCCCGGCTTGCCACTGACCCGCTCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgc                                                <  1:648531‑M2/150‑3 (MQ=255)                                                                                                         aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                              <  2:575680‑M2/150‑5 (MQ=255)                                                                                                         aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                              >  1:1018595‑M2/1‑146 (MQ=255)                                                                                                              cATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgggtcag                                         <  1:367964‑M1/150‑48 (MQ=255)                                                                                                                   gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                    >  1:699780/1‑150 (MQ=255)                                                                                                                   gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                    <  2:1359576/150‑1 (MQ=255)                                                                                                                    cACCGGTTCGGCATAGGCTTGGCCGATGGGGGTCGCGACGTTGGCCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAta                                   <  2:648531/150‑2 (MQ=255)                                                                                                                     aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                    >  2:159583/1‑116 (MQ=255)                                                                                                                     aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                    <  1:159583/116‑1 (MQ=255)                                                                                                                               cAGAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACGGACCCGCCCGCAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtccgtggcaagcagggggtgt                        >  2:241197‑M2/1‑124 (MQ=255)                                                                                                                                  aGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGc                     <  1:1344974/150‑1 (MQ=255)                                                                                                                                   ggCTTGGCCGATGGGGGTGGCGATGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                    <  1:1108757/150‑1 (MQ=255)                                                                                                                                      ttGGCGGAGGGGGGTGGCGACGTTAGCCACGCCTGGGCCGGTGATCCCGAATCACCCCCCGGGCGTGCCACTGTCCCGCGCGAAGCCGTCGGCCATGACGCCGGCGCCCTGCTCGTGGCGGTTCAATACATGGCGAATGCCGCTGCCCgg                 <  1:575680/150‑1 (MQ=255)                                                                                                                                      ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                              >  2:795736‑M1/1‑79 (MQ=255)                                                                                                                                      ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                              <  1:795736‑M1/121‑43 (MQ=255)                                                                                                                                         gCCGATGGGGGTGGCGACGTTGGTCCCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg              <  2:281478/150‑1 (MQ=255)                                                                                                                                           cGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCAcacccccatcggccaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatg            <  2:427477‑M2/150‑102 (MQ=255)                                                                                                                                                 gggTGGCGACGTTGGTCACGCCTAGGCCGGTGATGACGAAGCAcacccccatcggctaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatgaaa         <  1:924097‑M2/147‑105 (MQ=255)                                                                                                                                                 gggTGGCGACGTTGGTCACGCCTAGGCCGGTGATGACGAAGCAcacccccatcggctaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatgaaa         >  2:924097‑M2/1‑43 (MQ=255)                                                                                                                                                     gtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatgaaacccagga  <  1:1058970‑M1/150‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAGAAAACGCCGTGATGGGCGCAGTCATGGCGCGCTGGTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAG  >  NC_002947/4247561‑4247858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.