New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247709	35 (0.670)	3 (0.060)	3/232	NT	8.6%	coding (252/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247747	31 (0.630)					coding (214/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

GTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCT  >  NC_002947/4247598‑4247896                                                                                                                                                      |                                                                                                                                                      gTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGca                                                                                                                                                       >  2:1018595/1‑150 (MQ=255) gTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGca                                                                                                                                                       <  2:980005/150‑1 (MQ=255)  tCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCAc                                                                                                                                                      <  1:1058970‑M2/150‑2 (MQ=255)               gcaggcagCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGc                                                                                                                                         <  1:110772/150‑1 (MQ=255)                    cagccccagcccTTGCCCGGGCTGGCGGTGTGGTTGACGCGGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTG                                                                                                                                    >  2:1155286‑M1/1‑150 (MQ=255)                          cagcccTTGCCCAGGCTGGCGGTGTGGTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGC                                                                                                                              >  1:1001804‑M1/1‑150 (MQ=255)                                      aGGCTGGCGGTGTGGTTGACGCTGACAAGCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGATGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCg                                                                                                                  <  1:1290348/150‑1 (MQ=255)                                          tGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCa                                                                                                              <  2:407638/150‑1 (MQ=255)                                            gCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATg                                                                                                            >  2:149104/1‑150 (MQ=255)                                                  tgGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCg                                                                                                      <  2:840238/150‑1 (MQ=255)                                                    gTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATTAAGCCGgc                                                                                                    <  2:1001804/150‑1 (MQ=255)                                                     ttGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGgcg                                                                                                   >  1:1359576/1‑150 (MQ=255)                                                        aCGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCCTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGccc                                                                                                <  1:1307702/150‑1 (MQ=255)                                                            tagAAATCACCAGCATCGGCACCGAGTCGGCATAGGATTGGCCGAAGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACACCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCCCCCTGCt                                                                                            >  2:294961/3‑150 (MQ=255)                                                            tGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGAGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCt                                                                                            >  1:1103327/1‑150 (MQ=255)                                                               aaaTCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGt                                                                                         <  2:1365696/150‑1 (MQ=255)                                                                  tCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACTTTGGTCACGCCTGGGCCGGTGATGAGGAAGCACACTCCCGGCTTGCCACTGACCCGCTCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgc                                                                                      <  1:648531‑M2/150‑3 (MQ=255)                                                                    aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                    <  2:575680‑M2/150‑5 (MQ=255)                                                                    aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                    >  1:1018595‑M2/1‑146 (MQ=255)                                                                         cATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgggtcag                                                                               <  1:367964‑M1/150‑48 (MQ=255)                                                                              gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                          >  1:699780/1‑150 (MQ=255)                                                                              gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                          <  2:1359576/150‑1 (MQ=255)                                                                               cACCGGTTCGGCATAGGCTTGGCCGATGGGGGTCGCGACGTTGGCCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAta                                                                         <  2:648531/150‑2 (MQ=255)                                                                                aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                                                          <  1:159583/116‑1 (MQ=255)                                                                                aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                                                          >  2:159583/1‑116 (MQ=255)                                                                                          cAGAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACGGACCCGCCCGCAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtccgtggcaagcagggggtgt                                                              >  2:241197‑M2/1‑124 (MQ=255)                                                                                             aGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGc                                                           <  1:1344974/150‑1 (MQ=255)                                                                                              ggCTTGGCCGATGGGGGTGGCGATGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                          <  1:1108757/150‑1 (MQ=255)                                                                                                 ttGGCGGAGGGGGGTGGCGACGTTAGCCACGCCTGGGCCGGTGATCCCGAATCACCCCCCGGGCGTGCCACTGTCCCGCGCGAAGCCGTCGGCCATGACGCCGGCGCCCTGCTCGTGGCGGTTCAATACATGGCGAATGCCGCTGCCCgg                                                       <  1:575680/150‑1 (MQ=255)                                                                                                 ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                                                                    >  2:795736‑M1/1‑79 (MQ=255)                                                                                                 ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                                                                    <  1:795736‑M1/121‑43 (MQ=255)                                                                                                    gCCGATGGGGGTGGCGACGTTGGTCCCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                    <  2:281478/150‑1 (MQ=255)                                                                                                      cGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCAcacccccatcggccaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatg                                                  <  2:427477‑M2/150‑102 (MQ=255)                                                                                                            gggTGGCGACGTTGGTCACGCCTAGGCCGGTGATGACGAAGCAcacccccatcggctaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatgaaa                                               >  2:924097‑M2/1‑43 (MQ=255)                                                                                                            gggTGGCGACGTTGGTCACGCCTAGGCCGGTGATGACGAAGCAcacccccatcggctaagcctatgccgactcggtgccgatgctggtgatttccagcgtcaaccacaccgccagcctgggcaagggctggggctgcctgcatgaaa                                               <  1:924097‑M2/147‑105 (MQ=255)                                                                                                                      gTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAg                                  >  2:987156/1‑150 (MQ=255)                                                                                                                        tGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTCGCAGTTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAggg                                <  2:1058970/150‑1 (MQ=255)                                                                                                                               gCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATATTGGACGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCAc                         >  1:87980/1‑150 (MQ=255)                                                                                                                                ccTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGAGTGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACg                        <  1:1155286/150‑1 (MQ=255)                                                                                                                                  tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                    <  1:907888/120‑1 (MQ=255)                                                                                                                                  tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                    >  2:907888/1‑120 (MQ=255)                                                                                                                                    ggCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTTGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCgg                    >  2:115598/1‑150 (MQ=255)                                                                                                                                          tgatgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGc              <  2:963351/150‑1 (MQ=255)                                                                                                                                             tgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGCATGGAGGTGTCCGTCATGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGa           >  2:37796/1‑150 (MQ=255)                                                                                                                                              gaCGAAGCACACCCCCGGCTTGCCAATGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGaa          >  1:1260379/1‑150 (MQ=255)                                                                                                                                                 gAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGTCGCACTACTCGTGGAGGGTGAACTTATAACGCATTGGGCGGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGGCGGGGTGGCCGAacac       >  1:1033490/1‑150 (MQ=255)                                                                                                                                                   aGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACgg     >  2:273237/1‑150 (MQ=255)                                                                                                                                                      acacCCCCTGCTTGCCACGGACCCGCcacgagcagggcgccggcttcatggccgacggctgcgggcgggtccgtggcaagccgggggggtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctctg  >  2:241197‑M1/1‑26 (MQ=255)                                                                                                                                                      acacCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGtct  >  2:841482/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GTCCTGGGTTTCATGCAGGCAGCCCCAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCT  >  NC_002947/4247598‑4247896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.