New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247772	38 (0.720)	4 (0.080)	4/230	NT	10.2%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247810	35 (0.710)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

CAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACC  >  NC_002947/4247623‑4247920                                                                                                                                                      |                                                                                                                                                     cagcccTTGCCCAGGCTGGCGGTGTGGTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGC                                                                                                                                                      >  1:1001804‑M1/1‑150 (MQ=255)             aGGCTGGCGGTGTGGTTGACGCTGACAAGCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGATGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCg                                                                                                                                          <  1:1290348/150‑1 (MQ=255)                 tGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCa                                                                                                                                      <  2:407638/150‑1 (MQ=255)                   gCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATg                                                                                                                                    >  2:149104/1‑150 (MQ=255)                         tgGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCg                                                                                                                              <  2:840238/150‑1 (MQ=255)                           gTTGACGCTTGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATTAAGCCGgc                                                                                                                            <  2:1001804/150‑1 (MQ=255)                            ttGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGgcg                                                                                                                           >  1:1359576/1‑150 (MQ=255)                               aCGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCCTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGccc                                                                                                                        <  1:1307702/150‑1 (MQ=255)                                   tagAAATCACCAGCATCGGCACCGAGTCGGCATAGGATTGGCCGAAGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACACCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCCCCCTGCt                                                                                                                    >  2:294961/3‑150 (MQ=255)                                   tGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGAGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCt                                                                                                                    >  1:1103327/1‑150 (MQ=255)                                      aaaTCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGt                                                                                                                 <  2:1365696/150‑1 (MQ=255)                                         tCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACTTTGGTCACGCCTGGGCCGGTGATGAGGAAGCACACTCCCGGCTTGCCACTGACCCGCTCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgc                                                                                                              <  1:648531‑M2/150‑3 (MQ=255)                                           aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                                            <  2:575680‑M2/150‑5 (MQ=255)                                           aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                                            >  1:1018595‑M2/1‑146 (MQ=255)                                                cATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgggtcag                                                                                                       <  1:367964‑M1/150‑48 (MQ=255)                                                     gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                                                  <  2:1359576/150‑1 (MQ=255)                                                     gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                                                  >  1:699780/1‑150 (MQ=255)                                                      cACCGGTTCGGCATAGGCTTGGCCGATGGGGGTCGCGACGTTGGCCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAta                                                                                                 <  2:648531/150‑2 (MQ=255)                                                       aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                                                                                  <  1:159583/116‑1 (MQ=255)                                                       aCCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGaa                                                                                                                                  >  2:159583/1‑116 (MQ=255)                                                                 cAGAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACGGACCCGCCCGCAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtccgtggcaagcagggggtgt                                                                                      >  2:241197‑M2/1‑124 (MQ=255)                                                                    aGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGc                                                                                   <  1:1344974/150‑1 (MQ=255)                                                                     ggCTTGGCCGATGGGGGTGGCGATGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                                                  <  1:1108757/150‑1 (MQ=255)                                                                        ttGGCGGAGGGGGGTGGCGACGTTAGCCACGCCTGGGCCGGTGATCCCGAATCACCCCCCGGGCGTGCCACTGTCCCGCGCGAAGCCGTCGGCCATGACGCCGGCGCCCTGCTCGTGGCGGTTCAATACATGGCGAATGCCGCTGCCCgg                                                                               <  1:575680/150‑1 (MQ=255)                                                                        ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                                                                                            <  1:795736‑M1/121‑43 (MQ=255)                                                                        ttGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCcacgagcagggcgccggcttcatggccgacggctacgcgcgg                                                                                                            >  2:795736‑M1/1‑79 (MQ=255)                                                                           gCCGATGGGGGTGGCGACGTTGGTCCCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                            <  2:281478/150‑1 (MQ=255)                                                                                             gTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAg                                                          >  2:987156/1‑150 (MQ=255)                                                                                               tGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTCGCAGTTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAggg                                                        <  2:1058970/150‑1 (MQ=255)                                                                                                      gCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATATTGGACGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCAc                                                 >  1:87980/1‑150 (MQ=255)                                                                                                       ccTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGAGTGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACg                                                <  1:1155286/150‑1 (MQ=255)                                                                                                         tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                            >  2:907888/1‑120 (MQ=255)                                                                                                         tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                            <  1:907888/120‑1 (MQ=255)                                                                                                           ggCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTTGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCgg                                            >  2:115598/1‑150 (MQ=255)                                                                                                                 tgatgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGc                                      <  2:963351/150‑1 (MQ=255)                                                                                                                    tgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGCATGGAGGTGTCCGTCATGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGa                                   >  2:37796/1‑150 (MQ=255)                                                                                                                     gaCGAAGCACACCCCCGGCTTGCCAATGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGaa                                  >  1:1260379/1‑150 (MQ=255)                                                                                                                        gAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGTCGCACTACTCGTGGAGGGTGAACTTATAACGCATTGGGCGGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGGCGGGGTGGCCGAacac                               >  1:1033490/1‑150 (MQ=255)                                                                                                                          aGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACgg                             >  2:273237/1‑150 (MQ=255)                                                                                                                             acacCCCCTGCTTGCCACGGACCCGCcacgagcagggcgccggcttcatggccgacggctgcgggcgggtccgtggcaagccgggggggtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctctg                          >  2:241197‑M1/1‑26 (MQ=255)                                                                                                                             acacCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGtct                          >  2:841482/1‑150 (MQ=255)                                                                                                                               acCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGAt                                        <  2:1301395/134‑1 (MQ=255)                                                                                                                               acCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGAt                                        >  1:1301395/1‑134 (MQ=255)                                                                                                                                 ccccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCAc                      >  1:296424/1‑150 (MQ=255)                                                                                                                                   ccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGc                    >  2:1162465/1‑150 (MQ=255)                                                                                                                                     ggCTTGCCACTGACCAGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGACGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGAACGCCGGGGATGCCGAACACGGGCTCCACGcgg                  >  2:566405/1‑148 (MQ=255)                                                                                                                                          gCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGtt             <  1:987156/150‑1 (MQ=255)                                                                                                                                              cTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctatgccgactcggtgccgatg         <  1:367964‑M2/150‑104 (MQ=255)                                                                                                                                                   ccGCcacgagcagggcgccggcttcatggccgacggctacgcgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctatgccgactcggtgccgatgctggt    >  1:1018595‑M1/1‑4 (MQ=255)                                                                                                                                                   ccGCcacgagcagggcgccggcttcatggccgacggctacgcgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctatgccgactcggtgccgatgctggt    <  2:575680‑M1/150‑147 (MQ=255)                                                                                                                                                   ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                 >  2:795736‑M2/1‑42 (MQ=255)                                                                                                                                                   ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                 <  1:795736‑M2/121‑80 (MQ=255)                                                                                                                                                   ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCcaacaa    >  1:417343/1‑150 (MQ=255)                                                                                                                                                     gCcacgagcagggcgccggcttcatggccgacggctacgagcgggtcagtggcaagccgggagtgtgcttcctcatcaccggcccaggcgtgaccaaagtcgccacccccatcggccaagcctatgccgactcggtgccgatgctggtga  <  1:648531‑M1/150‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CAGCCCTTGCCCAGGCTGGCGGTGTGGTTGACGCTGGAAATCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACC  >  NC_002947/4247623‑4247920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.