New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4247772	38 (0.720)	4 (0.080)	4/230	NT	10.2%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247810	35 (0.710)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI

TCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAGG  >  NC_002947/4247663‑4247952                                                                                                                                                    |                                                                                                                                               tCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACTTTGGTCACGCCTGGGCCGGTGATGAGGAAGCACACTCCCGGCTTGCCACTGACCCGCTCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgc                                                                                                                                              <  1:648531‑M2/150‑3 (MQ=255)   aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                                                                            <  2:575680‑M2/150‑5 (MQ=255)   aCCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgg                                                                                                                                            >  1:1018595‑M2/1‑146 (MQ=255)             gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                                                                                  <  2:1359576/150‑1 (MQ=255)             gCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAt                                                                                                                                  >  1:699780/1‑150 (MQ=255)              cACCGGTTCGGCATAGGCTTGGCCGATGGGGGTCGCGACGTTGGCCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACAta                                                                                                                                 <  2:648531/150‑2 (MQ=255)                         cAGAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACCCCCCCGGCTTGCCACGGACCCGCCCGCAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtccgtggcaagcagggggtgt                                                                                                                      >  2:241197‑M2/1‑124 (MQ=255)                            aGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGc                                                                                                                   <  1:1344974/150‑1 (MQ=255)                             ggCTTGGCCGATGGGGGTGGCGATGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGcc                                                                                                                  <  1:1108757/150‑1 (MQ=255)                                ttGGCGGAGGGGGGTGGCGACGTTAGCCACGCCTGGGCCGGTGATCCCGAATCACCCCCCGGGCGTGCCACTGTCCCGCGCGAAGCCGTCGGCCATGACGCCGGCGCCCTGCTCGTGGCGGTTCAATACATGGCGAATGCCGCTGCCCgg                                                                                                               <  1:575680/150‑1 (MQ=255)                                   gCCGATGGGGGTGGCGACGTTGGTCCCGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                                                            <  2:281478/150‑1 (MQ=255)                                                     gTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAg                                                                                          >  2:987156/1‑150 (MQ=255)                                                       tGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTCGCAGTTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAggg                                                                                        <  2:1058970/150‑1 (MQ=255)                                                              gCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATATTGGACGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCAc                                                                                 >  1:87980/1‑150 (MQ=255)                                                               ccTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGAGTGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACg                                                                                <  1:1155286/150‑1 (MQ=255)                                                                 tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                                                            >  2:907888/1‑120 (MQ=255)                                                                 tGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAg                                                                                                            <  1:907888/120‑1 (MQ=255)                                                                   ggCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTTGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCgg                                                                            >  2:115598/1‑150 (MQ=255)                                                                         tgatgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGc                                                                      <  2:963351/150‑1 (MQ=255)                                                                            tgaCGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGCATGGAGGTGTCCGTCATGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGa                                                                   >  2:37796/1‑150 (MQ=255)                                                                             gaCGAAGCACACCCCCGGCTTGCCAATGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGaa                                                                  >  1:1260379/1‑150 (MQ=255)                                                                                gAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGTCGCACTACTCGTGGAGGGTGAACTTATAACGCATTGGGCGGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGGCGGGGTGGCCGAacac                                                               >  1:1033490/1‑150 (MQ=255)                                                                                  aGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACgg                                                             >  2:273237/1‑150 (MQ=255)                                                                                     acacCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGtct                                                          >  2:841482/1‑150 (MQ=255)                                                                                       acCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGAt                                                                        >  1:1301395/1‑134 (MQ=255)                                                                                       acCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGAt                                                                        <  2:1301395/134‑1 (MQ=255)                                                                                         ccccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCAc                                                      >  1:296424/1‑150 (MQ=255)                                                                                           ccGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGc                                                    >  2:1162465/1‑150 (MQ=255)                                                                                             ggCTTGCCACTGACCAGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGACGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGAACGCCGGGGATGCCGAACACGGGCTCCACGcgg                                                  >  2:566405/1‑148 (MQ=255)                                                                                                  gCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGtt                                             <  1:987156/150‑1 (MQ=255)                                                                                                      cTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaagcctatgccgactcggtgccgatg                                         <  1:367964‑M2/150‑104 (MQ=255)                                                                                                           ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                                                 <  1:795736‑M2/121‑80 (MQ=255)                                                                                                           ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGgcgggtcagtggcaagccgggggtgtgcttcgtcatcaccggcccaggcgtgaccaacgtcgccacccccatcggccaa                                                                 >  2:795736‑M2/1‑42 (MQ=255)                                                                                                           ccGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCcaacaa                                    >  1:417343/1‑150 (MQ=255)                                                                                                                          ggCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTg                     <  2:1103327/150‑1 (MQ=255)                                                                                                                           gCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCAGAATTTGGCCAACAACCGCACCAGCGCCTgg                    <  1:37796/150‑1 (MQ=255)                                                                                                                             cATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCATGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGcc                  >  2:439056/1‑150 (MQ=255)                                                                                                                             cATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGcc                  >  2:38996/1‑150 (MQ=255)                                                                                                                              aTGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGc                                                                                   <  1:1055151/84‑1 (MQ=255)                                                                                                                              aTGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGc                                                                                   >  2:1055151/1‑84 (MQ=255)                                                                                                                                     cGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCa          <  1:273237/150‑1 (MQ=255)                                                                                                                                             tGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGGCTCCACGCCGTAGTTGGCCAAGAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAgg  >  2:672983/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                               TCACCAGCATCGGCACCGAGTCGGCATAGGCTTGGCCGATGGGGGTGGCGACGTTGGTCACGCCTGGGCCGGTGATGACGAAGCACACCCCCGGCTTGCCACTGACCCGCGCGTAGCCGTCGGCCATGAAGCCGGCGCCCTGCTCGTGGCGGGTCAATACATGGCGAATGCCGCTGCCCGGCAGGCCACGGTACAGCTCCAGGGTGTGCACGCCGGGGATGCCGAACACGGTCTCCACGCCGTAGTTGGCCAACAACCGCACCAGCGCCTGGCCGGCTGTCAGGGTAAGG  >  NC_002947/4247663‑4247952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.