New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4294641	31 (0.590)	3 (0.060)	3/238	NT	7.9%	coding (776/1302 nt)	opdN	outer‑membrane porin D
	?	NC_002947	= 4294679	40 (0.790)					coding (738/1302 nt)	opdN	outer‑membrane porin D

GCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCA  >  NC_002947/4294501‑4294787                                                                                                                                             |                                                                                                                                                   gCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCt                                                                                                                                           >  2:918443/1‑150 (MQ=255)      ccGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTg                                                                                                                                      >  2:335300/1‑150 (MQ=255)      ccGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTg                                                                                                                                      <  1:392225/150‑1 (MQ=255)                  ttGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCg                                                                                                                          >  1:366373/1‑150 (MQ=255)                   tgtgGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGa                                                                                                                         <  1:543532/150‑1 (MQ=255)                    gtgGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAg                                                                                                                        <  2:366373/150‑1 (MQ=255)                              aGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgc                                                                                                              <  2:1210312‑M1/150‑39 (MQ=255)                                  tGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCgg                                                                                                                                             <  1:794340/115‑1 (MQ=255)                                  tGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCgg                                                                                                                                             >  2:794340/1‑115 (MQ=255)                                  tGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggt                                                                                                          <  2:1408566‑M2/150‑5 (MQ=255)                                    tAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccggtgg                                                                                                        <  1:545406‑M1/150‑45 (MQ=255)                                              tGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCa                                                                                              <  1:918443/150‑1 (MQ=255)                                               gCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAg                                                                                             <  1:694208/150‑1 (MQ=255)                                                 cGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCt                                                                                           >  1:852464/1‑150 (MQ=255)                                                  gCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccggtgggcagcctgtcggct                                                                                          <  2:597442‑M1/150‑59 (MQ=255)                                                             gATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGt                                                                               >  1:1165426/1‑150 (MQ=255)                                                             gATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTAATCACTCTTAGTCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGt                                                                               >  2:984814/1‑150 (MQ=255)                                                                              gCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGc                                                              >  2:809468/1‑150 (MQ=255)                                                                                            gATGTCATCTCTTTTTATCAGTCGCATGTAAGCCGAAAGTCTGCACACCGGCAGCGGCTGTCTGCCTACCAGGCCGTGTAACTGCTTGCGGTAGATATTCTCCAGCTTGGCCACTTGGTAATGGGCGCCGAAACGCTCGTCGAAACGGTa                                                <  2:79975/150‑1 (MQ=255)                                                                                            gATGTCATCACTTTTGATCAGGCGGATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTa                                                <  2:329441/150‑1 (MQ=255)                                                                                                   tcaCTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGaca                                         >  1:417839/1‑150 (MQ=255)                                                                                                   tcaCTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGaca                                         >  2:686877/1‑150 (MQ=255)                                                                                                     aCTCTTGATCAGGCGCATGTCGGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGgc                                                                        <  1:1272433/117‑1 (MQ=255)                                                                                                     aCTCTTGATCAGGCGCATGTCGGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGgc                                                                        >  2:1272433/1‑117 (MQ=255)                                                                                                         ttGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                  >  1:548116/1‑135 (MQ=255)                                                                                                         ttGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                  <  2:548116/135‑1 (MQ=255)                                                                                                         ttGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGcc                                   >  2:1117149/1‑150 (MQ=255)                                                                                                           gATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAg                                 >  1:78254/1‑150 (MQ=255)                                                                                                             tCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGt                               <  1:809468/150‑1 (MQ=255)                                                                                                                 gcgcATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGc                                                                                                             >  1:203195‑M2/1‑67 (MQ=255)                                                                                                                 gcgcATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGc                                                                                                             <  2:203195‑M2/68‑2 (MQ=255)                                                                                                                 gcgcATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGaa                           <  1:1117149/150‑1 (MQ=255)                                                                                                                          aGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagc                  <  2:597442‑M2/150‑93 (MQ=255)                                                                                                                              gACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCtggc              <  1:984814/150‑4 (MQ=255)                                                                                                                              gACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACGTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCg              <  1:992661/150‑1 (MQ=255)                                                                                                                                  ggCTGGTCACCGGCAGTGGCTTACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTAt          <  1:92609/150‑1 (MQ=255)                                                                                                                                     tGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCgg       >  1:767526/1‑149 (MQ=255)                                                                                                                                       cccACCGGCAGCGGCCGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAg     <  1:1346716/150‑1 (MQ=255)                                                                                                                                        ccACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgcttggcta    <  1:545406‑M2/150‑107 (MQ=255)                                                                                                                                         cagcGGCAACGGCTGACTGGACACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGACCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGc   >  2:413865/4‑150 (MQ=255)                                                                                                                                         cACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAAc                                                                <  2:1016820/89‑1 (MQ=255)                                                                                                                                         cACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAAc                                                                >  1:1016820/1‑89 (MQ=255)                                                                                                                                          aCCGccagcacttcctcggcctggtggccagtcagccgctgccggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgcttggctaca  <  2:1408566‑M1/150‑147 (MQ=255)                                                                                                                                             gccagcacttcctcggcctggtggccagtcagccgctgccggtgggcagcctgtcggctgacatgcgc                                                                                 <  2:203195‑M1/68‑68 (MQ=255)                                                                                                                                             gccagcacttcctcggcctggtggccagtcagccgctgccggtgggcagcctgtcggctgacatgcgc                                                                                 >  1:203195‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   GCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCAGCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCA  >  NC_002947/4294501‑4294787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.