New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4492810	36 (0.680)	4 (0.080)	4/230	NT	10.3%	coding (649/783 nt)	PP_3983	hypothetical protein
	?	NC_002947	= 4492819	36 (0.730)					coding (658/783 nt)	PP_3983	hypothetical protein

AAGCGACGAGTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCA  >  NC_002947/4492662‑4492958                                                                                                                                                     |                                                                                                                                                      aaGCGACGAGTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAgccg                                                                                                                                                      <  1:419206/150‑1 (MQ=255)     gacgaGTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCAc                                                                                                                                                  >  2:148136/1‑150 (MQ=255)          gTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGg                                                                                                                                             <  2:863255‑M2/150‑2 (MQ=255)              aCCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCC                                                                                                                                                       >  1:571960‑M1/1‑136 (MQ=255)              aCCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCC                                                                                                                                                       <  2:571960‑M1/136‑1 (MQ=255)                       tACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCctcggtggcggctggcagttgat                                                                                                                                >  1:845153‑M1/1‑127 (MQ=255)                         cGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAACCCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              <  1:435665/150‑1 (MQ=255)                                 tAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAag                                                                                                                      >  1:326705/1‑150 (MQ=255)                                  aGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAag‑a                                                                                                                    <  2:1234462/150‑1 (MQ=255)                                    aaGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTACATTCAGTCTGCAAAGGCATCTGGCGGTCCAGCCGCCAGCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGc                                                                                                                  <  1:958445/150‑1 (MQ=255)                                     aGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCCTCGGTGGCggctggcagttgatgggtcactgcagac                                                                                                                  >  2:845153‑M2/1‑122 (MQ=255)                                       cccTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCa                                                                                                               >  2:77525/1‑150 (MQ=255)                                          tACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAg                                                                                                                                              >  1:674909/1‑117 (MQ=255)                                          tACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAg                                                                                                                                              <  2:674909/117‑1 (MQ=255)                                               aGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGTCCCGTTGAAAG‑AGCCCAGCGCTGAt                                                                                                       <  1:38874/150‑1 (MQ=255)                                                       cGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTacca                                                                                               <  1:148136/150‑1 (MQ=255)                                                       cGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGACCGTTGAAAG‑AGCCCAGCGCTGATCAGTacca                                                                                               <  2:1157395/150‑1 (MQ=255)                                                           aaaCCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCAt                                                                                           <  1:863255/150‑1 (MQ=255)                                                               cGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTc                                                                                       >  1:1017089/1‑150 (MQ=255)                                                                      aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTaccac                                                                                              >  1:194896/1‑136 (MQ=255)                                                                      aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTaccac                                                                                              <  2:194896/136‑1 (MQ=255)                                                                      aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCtt                                                                                >  2:1220550/1‑150 (MQ=255)                                                                             aaCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTgg                                                                         <  1:77525/150‑1 (MQ=255)                                                                              aCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGgg                                                                                                                                            <  2:367945‑M2/83‑3 (MQ=255)                                                                              aCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGgg                                                                                                                                            >  1:367945‑M2/1‑81 (MQ=255)                                                                                    ttGGGATCGAGAAAGCGAACGTTCGCAAATTGCAGTCAGTCTGCAATGACACATCAACTGCCAGGGGTTACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGa                                                                  <  1:25647/150‑1 (MQ=255)                                                                                              gaAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCctcggtggcggctgg                                                                                                                                        >  2:707426‑M1/1‑56 (MQ=255)                                                                                              gaAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCctcggtggcggctgg                                                                                                                                        <  1:707426‑M1/71‑16 (MQ=255)                                                                                              gaAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTa                                                        >  1:876840/1‑150 (MQ=255)                                                                                                  gCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTAcgcg                                                    >  1:462435/1‑150 (MQ=255)                                                                                                                aTTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGaaaa                                      <  1:1020319/150‑1 (MQ=255)                                                                                                                 ttCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAg                                     >  2:941432/1‑150 (MQ=255)                                                                                                                 ttCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGAACGTTGAAAGCAGAATA‑TGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAg                                     >  1:1242612/1‑150 (MQ=255)                                                                                                                       tCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTAGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCg                               <  2:627357/150‑1 (MQ=255)                                                                                                                          gTCTGCAGTGACCCATCAACTGCCAGCCgccaccgagggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgttgatcaatgtcgccggtttcacgaacttgctttgtagggct                             >  2:845153‑M1/1‑28 (MQ=255)                                                                                                                              gCAAGGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGc                        <  2:1242612/150‑1 (MQ=255)                                                                                                                               cAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              >  2:968232/1‑48 (MQ=255)                                                                                                                               cAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              <  1:968232/48‑1 (MQ=255)                                                                                                                                      ccATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAAt                                 >  2:851315/1‑133 (MQ=255)                                                                                                                                      ccATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAAt                                 <  1:851315/133‑1 (MQ=255)                                                                                                                                        aTCAACTGCCAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgttgatcaatgtcgccggtttcacgaacttgctttgtagggcttctaggatttcgta               >  1:845153‑M2/1‑23 (MQ=255)                                                                                                                                        aTCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGgc                             >  2:378602/1‑135 (MQ=255)                                                                                                                                        aTCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGgc                             <  1:378602/135‑1 (MQ=255)                                                                                                                                            aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACa                                                                     <  1:961462/91‑1 (MQ=255)                                                                                                                                            aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACa                                                                     >  2:961462/1‑91 (MQ=255)                                                                                                                                            aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCg          >  1:76770/1‑150 (MQ=255)                                                                                                                                              tGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCct                      <  1:944271/136‑1 (MQ=255)                                                                                                                                              tGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCct                      >  2:944271/1‑136 (MQ=255)                                                                                                                                                ccAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttc                                                                                      >  2:707426‑M2/1‑15 (MQ=255)                                                                                                                                                ccAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttc                                                                                      <  1:707426‑M2/71‑57 (MQ=255)                                                                                                                                                ccAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGc      <  2:876840/150‑1 (MQ=255)                                                                                                                                                  aGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGt    <  2:462435/150‑1 (MQ=255)                                                                                                                                                    ccgccACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCa  >  2:1039938/1‑150 (MQ=255)                                                                                                                                                    ccctcggtggcggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgt                                                                      <  2:367945‑M1/83‑82 (MQ=255)                                                                                                                                                    ccctcggtggcggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgt                                                                      >  1:367945‑M1/1‑2 (MQ=255)                                                                                                                                                     cctcggtggcggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgttgatcaatgtcgccggtttcacgaacttgctttgtagggcttctaggatttcgtagagatgggtgaac  <  2:863255‑M1/150‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AAGCGACGAGTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCA  >  NC_002947/4492662‑4492958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.