New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4492810	36 (0.680)	4 (0.080)	4/230	NT	10.3%	coding (649/783 nt)	PP_3983	hypothetical protein
	?	NC_002947	= 4492819	36 (0.730)					coding (658/783 nt)	PP_3983	hypothetical protein

GTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCA  >  NC_002947/4492671‑4492958                                                                                                                                                     |                                                                                                                                             gTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGg                                                                                                                                             <  2:863255‑M2/150‑2 (MQ=255)                cGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAACCCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              <  1:435665/150‑1 (MQ=255)                        tAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAag                                                                                                                      >  1:326705/1‑150 (MQ=255)                         aGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAag‑a                                                                                                                    <  2:1234462/150‑1 (MQ=255)                           aaGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTACATTCAGTCTGCAAAGGCATCTGGCGGTCCAGCCGCCAGCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGc                                                                                                                  <  1:958445/150‑1 (MQ=255)                            aGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCCTCGGTGGCggctggcagttgatgggtcactgcagac                                                                                                                  >  2:845153‑M2/1‑122 (MQ=255)                              cccTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCa                                                                                                               >  2:77525/1‑150 (MQ=255)                                 tACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAg                                                                                                                                              >  1:674909/1‑117 (MQ=255)                                 tACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAg                                                                                                                                              <  2:674909/117‑1 (MQ=255)                                      aGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGTCCCGTTGAAAG‑AGCCCAGCGCTGAt                                                                                                       <  1:38874/150‑1 (MQ=255)                                              cGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTacca                                                                                               <  1:148136/150‑1 (MQ=255)                                              cGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGACCGTTGAAAG‑AGCCCAGCGCTGATCAGTacca                                                                                               <  2:1157395/150‑1 (MQ=255)                                                  aaaCCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCAt                                                                                           <  1:863255/150‑1 (MQ=255)                                                      cGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTc                                                                                       >  1:1017089/1‑150 (MQ=255)                                                             aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTaccac                                                                                              >  1:194896/1‑136 (MQ=255)                                                             aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTaccac                                                                                              <  2:194896/136‑1 (MQ=255)                                                             aTTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCtt                                                                                >  2:1220550/1‑150 (MQ=255)                                                                    aaCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTgg                                                                         <  1:77525/150‑1 (MQ=255)                                                                     aCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGgg                                                                                                                                            >  1:367945‑M2/1‑81 (MQ=255)                                                                     aCGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGgg                                                                                                                                            <  2:367945‑M2/83‑3 (MQ=255)                                                                           ttGGGATCGAGAAAGCGAACGTTCGCAAATTGCAGTCAGTCTGCAATGACACATCAACTGCCAGGGGTTACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGa                                                                  <  1:25647/150‑1 (MQ=255)                                                                                     gaAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTa                                                        >  1:876840/1‑150 (MQ=255)                                                                                         gCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTAcgcg                                                    >  1:462435/1‑150 (MQ=255)                                                                                                       aTTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGaaaa                                      <  1:1020319/150‑1 (MQ=255)                                                                                                        ttCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAg                                     >  2:941432/1‑150 (MQ=255)                                                                                                        ttCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGAACGTTGAAAGCAGAATA‑TGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAg                                     >  1:1242612/1‑150 (MQ=255)                                                                                                              tCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTAGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCg                               <  2:627357/150‑1 (MQ=255)                                                                                                                     gCAAGGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGc                        <  2:1242612/150‑1 (MQ=255)                                                                                                                      cAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              >  2:968232/1‑48 (MQ=255)                                                                                                                      cAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGccc                                                                                                                              <  1:968232/48‑1 (MQ=255)                                                                                                                             ccATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAAt                                 <  1:851315/133‑1 (MQ=255)                                                                                                                             ccATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAAt                                 >  2:851315/1‑133 (MQ=255)                                                                                                                               aTCAACTGCCAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttctcgatcccaagctcgttgatcaatgtcgccggtttcacgaacttgctttgtagggcttctaggatttcgta               >  1:845153‑M2/1‑23 (MQ=255)                                                                                                                               aTCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGgc                             >  2:378602/1‑135 (MQ=255)                                                                                                                               aTCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGgc                             <  1:378602/135‑1 (MQ=255)                                                                                                                                   aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACa                                                                     <  1:961462/91‑1 (MQ=255)                                                                                                                                   aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACa                                                                     >  2:961462/1‑91 (MQ=255)                                                                                                                                   aCTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCg          >  1:76770/1‑150 (MQ=255)                                                                                                                                     tGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCct                      <  1:944271/136‑1 (MQ=255)                                                                                                                                     tGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCct                      >  2:944271/1‑136 (MQ=255)                                                                                                                                       ccAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttc                                                                                      >  2:707426‑M2/1‑15 (MQ=255)                                                                                                                                       ccAGCCGCCACCGAGggctggcagttgatgggtcattgcagactgaatggaatttgcgaaccttcgctttc                                                                                      <  1:707426‑M2/71‑57 (MQ=255)                                                                                                                                       ccAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGc      <  2:876840/150‑1 (MQ=255)                                                                                                                                         aGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGt    <  2:462435/150‑1 (MQ=255)                                                                                                                                           ccgccACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCa  >  2:1039938/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                             GTTCACCCATCTCTACGAAATCCTAGAAGCCCTACAAAGCAAGTTCGTGAAACCGGCGACATTGATCAACGAGCTTGGGATCGAGAAAGCGAAGGTTCGCAAATTCCATTCAGTCTGCAATGACCCATCAACTGCCAGCCGCCACCGAGGGCTGGCAAAAGGCCCGTTGAAAG‑AGCCCAGCGCTGATCAGTACCACCATGCTCGAACCTTCGCTTGGGACATGATTCTTTCCTACGCGCAGTGGTTGGAAAAGAAATCGGCGCAGCCTGACTGACGCTCGTGGCGTCA  >  NC_002947/4492671‑4492958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.